| TM1040_0015 |
CDS |
NC_008044 |
16023 |
16916 |
+ |
894 |
UDP-glucose pyrophosphorylase |
YP_612010 |
decreased coverage |
0.0000637346 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0021 |
CDS |
NC_008044 |
23420 |
23884 |
- |
465 |
PTS IIA-like nitrogen-regulatory protein PtsN |
YP_612016 |
decreased coverage |
0.00251551 |
normal |
0.584916 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0022 |
CDS |
NC_008044 |
23940 |
24503 |
- |
564 |
SSU ribosomal protein S30P / sigma 54 modulation protein |
YP_612017 |
decreased coverage |
0.00266512 |
normal |
0.613644 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0137 |
CDS |
NC_008044 |
151103 |
152278 |
- |
1176 |
histidine kinase |
YP_612132 |
decreased coverage |
0.00141334 |
normal |
0.983928 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0143 |
CDS |
NC_008044 |
156335 |
156646 |
- |
312 |
ETC complex I subunit region |
YP_612138 |
decreased coverage |
0.00000705205 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0145 |
CDS |
NC_008044 |
159057 |
160424 |
- |
1368 |
deoxyguanosinetriphosphate triphosphohydrolase |
YP_612140 |
decreased coverage |
0.000232928 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0413 |
CDS |
NC_008044 |
423335 |
424114 |
- |
780 |
hypothetical protein |
YP_612408 |
decreased coverage |
0.00475452 |
normal |
0.256697 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0421 |
CDS |
NC_008044 |
431975 |
432754 |
- |
780 |
mannosyl-3-phosphoglycerate phosphatase |
YP_612416 |
decreased coverage |
0.00171889 |
normal |
0.264679 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0491 |
CDS |
NC_008044 |
513650 |
514654 |
- |
1005 |
aldo/keto reductase |
YP_612486 |
decreased coverage |
0.00588566 |
normal |
0.160086 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0686 |
CDS |
NC_008044 |
734517 |
735437 |
+ |
921 |
D-alanine--D-alanine ligase |
YP_612681 |
normal |
0.280639 |
decreased coverage |
0.000224556 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0687 |
CDS |
NC_008044 |
735425 |
736324 |
+ |
900 |
cell division protein FtsQ |
YP_612682 |
normal |
0.0983299 |
decreased coverage |
0.000241 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0688 |
CDS |
NC_008044 |
736308 |
737660 |
+ |
1353 |
cell division protein FtsA |
YP_612683 |
normal |
0.0260143 |
decreased coverage |
0.000277221 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0689 |
CDS |
NC_008044 |
738085 |
739758 |
+ |
1674 |
cell division protein FtsZ |
YP_612684 |
unclonable |
0.0000000108594 |
decreased coverage |
0.000313873 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0690 |
CDS |
NC_008044 |
739957 |
740904 |
+ |
948 |
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
YP_612685 |
normal |
0.0379633 |
decreased coverage |
0.000248661 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0691 |
CDS |
NC_008044 |
741250 |
742101 |
+ |
852 |
competence lipoprotein ComL, putative |
YP_612686 |
normal |
0.0174924 |
decreased coverage |
0.000229911 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0692 |
CDS |
NC_008044 |
742178 |
743827 |
+ |
1650 |
DNA repair protein RecN |
YP_612687 |
normal |
0.0261152 |
decreased coverage |
0.000301908 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0796 |
CDS |
NC_008044 |
845629 |
846108 |
+ |
480 |
single-strand binding protein |
YP_612791 |
normal |
1 |
decreased coverage |
0.000000662422 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0797 |
CDS |
NC_008044 |
846108 |
846362 |
+ |
255 |
hypothetical protein |
YP_612792 |
normal |
1 |
decreased coverage |
0.000000568593 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0798 |
CDS |
NC_008044 |
846385 |
846966 |
+ |
582 |
hypothetical protein |
YP_612793 |
normal |
1 |
decreased coverage |
0.000000625591 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0813 |
CDS |
NC_008044 |
857163 |
857633 |
+ |
471 |
hypothetical protein |
YP_612808 |
decreased coverage |
0.00956825 |
hitchhiker |
0.00183494 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0826 |
CDS |
NC_008044 |
867997 |
868806 |
+ |
810 |
hypothetical protein |
YP_612821 |
decreased coverage |
0.000568663 |
normal |
0.254553 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_0863 |
CDS |
NC_008044 |
917168 |
917932 |
- |
765 |
DSBA oxidoreductase |
YP_612858 |
decreased coverage |
0.00216121 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1017 |
CDS |
NC_008044 |
1088369 |
1089136 |
+ |
768 |
hypothetical protein |
YP_613012 |
decreased coverage |
0.00283953 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1078 |
CDS |
NC_008044 |
1153751 |
1155127 |
- |
1377 |
pyruvate dehydrogenase subunit beta |
YP_613073 |
decreased coverage |
0.00798693 |
normal |
0.879524 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1160 |
CDS |
NC_008044 |
1250605 |
1250919 |
+ |
315 |
cupin 2, barrel |
YP_613155 |
normal |
0.677962 |
decreased coverage |
0.00806774 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1161 |
CDS |
NC_008044 |
1250925 |
1251590 |
- |
666 |
ribosomal large subunit pseudouridine synthase E |
YP_613156 |
normal |
1 |
decreased coverage |
0.00928122 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1162 |
CDS |
NC_008044 |
1251838 |
1252422 |
+ |
585 |
HNH endonuclease |
YP_613157 |
normal |
1 |
decreased coverage |
0.00934225 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1163 |
CDS |
NC_008044 |
1252474 |
1253520 |
- |
1047 |
ornithine cyclodeaminase |
YP_613158 |
normal |
0.833995 |
decreased coverage |
0.00431249 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1177 |
CDS |
NC_008044 |
1266814 |
1269228 |
- |
2415 |
hypothetical protein |
YP_613172 |
decreased coverage |
0.00247698 |
normal |
0.649292 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1223 |
CDS |
NC_008044 |
1313953 |
1315497 |
+ |
1545 |
protein of unknown function DUF853, NPT hydrolase putative |
YP_613218 |
decreased coverage |
0.00822087 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1481 |
CDS |
NC_008044 |
1582635 |
1583594 |
- |
960 |
NAD-dependent epimerase/dehydratase |
YP_613476 |
decreased coverage |
0.00831994 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1548 |
CDS |
NC_008044 |
1654635 |
1656215 |
- |
1581 |
5'-nucleotidase-like |
YP_613543 |
decreased coverage |
0.00999704 |
normal |
0.364034 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1625 |
CDS |
NC_008044 |
1732375 |
1734075 |
- |
1701 |
phage terminase |
YP_613620 |
decreased coverage |
0.000276041 |
normal |
0.989877 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1740 |
CDS |
NC_008044 |
1834669 |
1836678 |
+ |
2010 |
DNA topoisomerase IV subunit B |
YP_613735 |
decreased coverage |
0.00895559 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1798 |
CDS |
NC_008044 |
1890558 |
1890881 |
+ |
324 |
hypothetical protein |
YP_613793 |
decreased coverage |
0.00123437 |
normal |
0.0181915 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_1799 |
CDS |
NC_008044 |
1890915 |
1891604 |
+ |
690 |
helix-turn-helix, type 11 |
YP_613794 |
decreased coverage |
0.000591723 |
normal |
0.0198726 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_2269 |
CDS |
NC_008044 |
2383855 |
2384532 |
- |
678 |
lipolytic enzyme, G-D-S-L |
YP_614263 |
decreased coverage |
0.00077116 |
normal |
0.478679 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_2686 |
CDS |
NC_008044 |
2825147 |
2826733 |
- |
1587 |
extracellular solute-binding protein |
YP_614680 |
decreased coverage |
0.0000382125 |
normal |
0.980281 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_2750 |
CDS |
NC_008044 |
2898076 |
2899119 |
+ |
1044 |
TRAP dicarboxylate transporter, DctP subunit |
YP_614744 |
decreased coverage |
0.000216568 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_R0002 |
rRNA |
NC_008044 |
144962 |
146416 |
+ |
1455 |
16S ribosomal RNA |
|
decreased coverage |
0.0087575 |
normal |
1 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_R0020 |
tRNA |
NC_008044 |
1257137 |
1257222 |
+ |
86 |
tRNA-Leu |
|
normal |
1 |
decreased coverage |
0.00905739 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |
| TM1040_R0050 |
tRNA |
NC_008044 |
2984654 |
2984740 |
- |
87 |
tRNA-Leu |
|
decreased coverage |
0.0025278 |
normal |
0.537231 |
Ruegeria sp. TM1040 |
Bacteria |
|
|
- |