| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1799 |
|---|
| Symbol | |
|---|
| ID | 4076945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1890915 |
|---|
| End bp | 1891604 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638007114 |
|---|
| Product | helix-turn-helix, type 11 |
|---|
| Protein accession | YP_613794 |
|---|
| Protein GI | 99081640 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000591723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0198726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCA CCGACCGCCT TTTTGAAATT ATCCAGATCC TGCGCGACGG GAAATTGCAC
CGCGCGCAGG ACATTGCCGC GCGGCTCGAA GTGTCGACCC GGACCATTTA CCGCGATATG
GACACGCTTG TGGCCTCTGG CGTTCCGGTC GAAGGCGAGC GCGGCGTCGG CTATATGGTG
CGCGAAGCGA TCACCCTGCC TCCGCTGACG CTGACCCCAT CCGAGCTGGA GGCGCTCAAT
CTCGGCATGG CCATTGTCGC CGAAGCGGCC GATCCCGAAC TCAAGTCCGC TGCCGAGAGC
CTCGCCGCCA AGGTCGACGC CGTGCTGCCG GTGGAAACCG TGGCCGAGGC AGAGGCGTGG
AAATTTGCCG TCTATCCCTT TGGCGATGCG GCGCGTGGCT TTGCCTGGAT GCCCACCTTG
CGGGCGGCGA TCAAGGCGCG CCAGAAGCTG GCCCTGCGCT ACCGGCGCAT TGACCAGACC
CTGACCGAGC GGGTGATCCG CCCGCTTCAT ATGGAATATT GGGGGCGTGT CTGGACGCTG
ACGGCATGGT GCGAAACACG AGGCGATTTT CGCGTCTTCC GCGTCGATCT CATTGAGACG
GCCGAGGCCT TGCCTGAGCT TTTTGTAGAT GAACCGGGCA AACGCTTGCA GGATTATCAA
GCCTGCGAGG ATGCGCGTGA GGGCTCCTGA
|
|---|
| Protein sequence | MRRTDRLFEI IQILRDGKLH RAQDIAARLE VSTRTIYRDM DTLVASGVPV EGERGVGYMV
REAITLPPLT LTPSELEALN LGMAIVAEAA DPELKSAAES LAAKVDAVLP VETVAEAEAW
KFAVYPFGDA ARGFAWMPTL RAAIKARQKL ALRYRRIDQT LTERVIRPLH MEYWGRVWTL
TAWCETRGDF RVFRVDLIET AEALPELFVD EPGKRLQDYQ ACEDAREGS
|
|---|
| |