| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1223 |
|---|
| Symbol | |
|---|
| ID | 4075931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1313953 |
|---|
| End bp | 1315497 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638006531 |
|---|
| Product | protein of unknown function DUF853, NPT hydrolase putative |
|---|
| Protein accession | YP_613218 |
|---|
| Protein GI | 99081064 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0433] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00822087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGG AAATATTCGT CGGTGGCGGA GGGGACGCAT ATGGCGATCC ACAATACCTC
ACGTTGAAAT ATGCCAACCG GCACGGTCTG ATTGCGGGCG CAACGGGAAC CGGTAAAACC
GTTACACTTC AAATCCTTGC CGAGAGTTTC TCGAATGAAG GCGTGCCGGT CATCTTGGCG
GATGTCAAAG GAGACCTGTC CGGACTGGCG CGCGCAGGCA GCGAAACGGC GGAGTTGCAT
GCGCCTTTCG TGAAAAGAGC ACAAAAAATT GGATTTACCT CTTTTTCCTA TCACGACACC
CCCGTCACCT TCTGGGATCT CTTTGCACAA CAGGGCCATC CGATCCGGAC CACGGTTGCC
GAAATGGGGC CTTTGCTGCT GTCGCGTCTG CTGGAACTCA GCGAAGCACA GGAGGGTATC
CTGAACATTG CCTTCCGGCT TGCGGATGAG CAGGGGCTGC CGCTGCTGGA TCTCAAGGAT
CTACAAGCGC TGTTGGTCTG GGTCGGCGAG AACCGCGAAA GCCTGTCCCT GCGCTACGGC
AATGTCTCCA CCGCTTCGAT CGGCGCCATC CAGCGCCGCC TGCTGGTTCT GGAGAACCAG
GGCGGGGCGC TGATCTTTGG CGAGCCGGCC TTGGATCTTG AGGATCTGAT GCGCTTTGAT
GCTGCGGGCC GGGGCATGGT GAACATTCTG GCCGCGGATA AATTGATGGC TTCTCCAAAG
CTTTACGCGA CGTTCTTGCT GTGGCTGTTG AGCGAGCTGT TCGAGAGCCT TCCTGAAGTC
GGAGATCCGG AAAAGCCCAA GCTGGTGTTC TTTTTCGACG AGGCGCATCT CCTGTTTGAA
GACGCACCCA AAGCCCTCAT CGACAAGGTG GAACAGGTCG CACGGCTGAT CCGCTCCAAG
GGGGTTGGGA TCTATTTTGT CACCCAGTCT CCGGACGACA TTCCTGAGGA TATTCTGGGG
CAGTTGGGCA ATCGCATCCA ACATGCGCTG CGTGCGTTTA CGGCGCGGGA TCAGAAGAAG
CTGAAGCTTG CCGCAGAAAC CTATCGTGCA AACCCGCGTT TTTCGACCGA AGACGCCATC
CGTGAGGTCG GCGTCGGCGA GGCGGTGACC TCCATGCTCG AGAAAAAGGC CGTACCTGGC
GTGGTGGAGC GGACGCTTAT TCGCCCGCCC TCGAGCCAGC TTGGACCGAT CACCGAAGAG
TTCCGCAGGA GTGTAATGCA AGCGTCTGAT ATGGCGGGAA AATATGACAA GTCTGTTGAT
CGCCATTCAG CCTATGAAAT CCTGAAAGAG CGGGCGGACA AAGCCTCGAG AGAAGCGGCA
GACGCCGAGG CGCAAGCCGA AACAGCGCCA GATCCGGTGG TGCGCGAGTT CAGCGCCGCG
CGACGGTATA GCGGCAGTCG CGTGGGGCGA TCCACCTCGC GCCGGATCGG CGGCGGTGAC
ACTTTTGCCT CCGCCATGTC CGAGTCGGTG ATCAAAGAAC TGAAAGGCAC CACCGGGCGG
CGCATCGTTC GCGGGATTCT GGGCGGGCTC TTCAAGGGGC GCTGA
|
|---|
| Protein sequence | MAEEIFVGGG GDAYGDPQYL TLKYANRHGL IAGATGTGKT VTLQILAESF SNEGVPVILA
DVKGDLSGLA RAGSETAELH APFVKRAQKI GFTSFSYHDT PVTFWDLFAQ QGHPIRTTVA
EMGPLLLSRL LELSEAQEGI LNIAFRLADE QGLPLLDLKD LQALLVWVGE NRESLSLRYG
NVSTASIGAI QRRLLVLENQ GGALIFGEPA LDLEDLMRFD AAGRGMVNIL AADKLMASPK
LYATFLLWLL SELFESLPEV GDPEKPKLVF FFDEAHLLFE DAPKALIDKV EQVARLIRSK
GVGIYFVTQS PDDIPEDILG QLGNRIQHAL RAFTARDQKK LKLAAETYRA NPRFSTEDAI
REVGVGEAVT SMLEKKAVPG VVERTLIRPP SSQLGPITEE FRRSVMQASD MAGKYDKSVD
RHSAYEILKE RADKASREAA DAEAQAETAP DPVVREFSAA RRYSGSRVGR STSRRIGGGD
TFASAMSESV IKELKGTTGR RIVRGILGGL FKGR
|
|---|
| |