| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0690 |
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| Symbol | lpxC |
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| ID | 4077357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 739957 |
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| End bp | 740904 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005987 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_612685 |
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| Protein GI | 99080531 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0379633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000248661 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGGCACA TTGTGCAGAA TACGCTCAAA GCAGCAGTCA CCTTTGAAGG CACCGGCCTG
CATTCTGGCA AACCGGCCAA GATGGTTGTG CATCCGGCTC CGGCTGGTCA CGGCATCACC
TTCGTGCGTG TGGACATTGC TCTGGGCAAT ACCCTCATTC CGGCACGCTG GGATATGGTG
GAGCGCACCG CGCTCTGCAC CCGCCTCGTA AACGGGGCCG GGGTATCCGT GTCGACGGTC
GAGCACATCA TGGCAGCGCT TGCAGGCTGT GGTGTTCACA ATGCACGTGT GGAGATCGAC
GGGCCCGAAG TTCCGATCAT GGACGGCTCC TCGGCAGAGT TTGTGCGTGA GATCATGGCC
ACGGGTATTC AGCGCCTTGG CGTCCCCGTG CGCGCCTGGA AAGTGCTGAA GCCGGTTATG
GTTGAAACCG AAGATGCGCG CGCGACATTG CTGCCCTGCG ATCGACTAAA AATCTCCTTT
GATATCGACT TTGCGGAAGA AGGTATTGGC CATCAGAGCC GTGAGCTGGA TCTGCGCAAC
GGTACCTTCG CGCGCGAACT TTGCGACAGC CGCACCTTCT GCCGCCGCGC AGATGTCGAG
ACGATGCAGG CCAACGGTCT TGCGCTTGGT GGTGTGCCGG GCGAAAACGC GGTCGTGTTT
GATGGCCCCA CCGTGCATGC AGGGTCCGGC CTTCGCCATC CTGATGAGCC TGTGCGTCAC
AAGATGCTGG ATGCGCTTGG TGATCTTGCA TTGGCGGGCG CGCCGATCTT TGGTCACTAT
GTTGGTGAAC GGGCAGGGCA CTCGCTCACC AATACGCTTC TTCGTGCGCT TTTTGACACC
CCTGGCGCAG TGCGCGAAGT CACCTGCGAC CCGATCATGA CCGCGCGCCT GCCTGGTCAG
GGGCTCGTCT GGTCCGAAAT CCCCGCGCAG GTGCGCCGCG TCGCCTGA
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| Protein sequence | MRHIVQNTLK AAVTFEGTGL HSGKPAKMVV HPAPAGHGIT FVRVDIALGN TLIPARWDMV
ERTALCTRLV NGAGVSVSTV EHIMAALAGC GVHNARVEID GPEVPIMDGS SAEFVREIMA
TGIQRLGVPV RAWKVLKPVM VETEDARATL LPCDRLKISF DIDFAEEGIG HQSRELDLRN
GTFARELCDS RTFCRRADVE TMQANGLALG GVPGENAVVF DGPTVHAGSG LRHPDEPVRH
KMLDALGDLA LAGAPIFGHY VGERAGHSLT NTLLRALFDT PGAVREVTCD PIMTARLPGQ
GLVWSEIPAQ VRRVA
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