| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2686 |
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| Symbol | |
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| ID | 4077597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2825147 |
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| End bp | 2826733 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638008011 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_614680 |
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| Protein GI | 99082526 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000382125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.980281 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTC TAGGGATGAC GCGGCGTGGC GCGATGGCTG CGATGCTTGC GACGACGGCA
ATGGCGGGGG TGGCGATGGG CGTGGCGCCT GCCGCAGCGC AGACACCGCC TGGCGTGCTG
ATCGTGGGCC AGATCGCAGA GCCAAAAGCG CTGGACCCGG CGGCAGTGAC GGCGGTAAAT
GACTTCCGCA TCCTGATGAA CGTCTATGAC GGTCTGGTGC GCTACAAGGA CGGCACGCTC
GAGGTCGAAC CCGCGCTGGC GACCGACTGG AGCATCTCCG AAGATGGCAC CGAATATACA
TTCACGCTGC GCGAAGGGGT GTCGTTTCAT GACGGCAGCG CCTTTGATGC CGAGGCGGTG
GTGTTCAACT TTGAGCGCAT GCTCAATGAG GATCACCCCT ATCACAACAC CGGCCCCTTC
CCGCTGGCCT TCTTCTTTTC TGCCGTGGAG AGCGTCGAGG CCGTTGATGA TCTGACGGTG
AAATTCAAAC TGAACGCGCC CTATGCGCCG TTCCTGTCGA ATCTCGCTTA TCCTACAGGC
CTGATTGTAT CGCCTGAGGC GGTCAAGACC CATGGCGCGG AGTTCGGCCG CAACCCCTCC
GGCACCGGTG CTTTCAAATT TGCCGAGTGG CGCTCCAATG AGGCCGTGGT GGTCGAGAAA
AATCCCGACT ACTGGGATGG CGCGGCAGAG CTGGACGCGG TGGTCTTTCG CCCGATCACC
GATGCCAACA CCCGCACGGC AGAAATGCTG GCAGGTGGCA TTGATCTGAT GGTCGAGGTG
CCGCCGGTGG CACTGTCGGA GTTTCAGGGC GATGCTTTCA CCGTGCATGA ACAAGCCGGC
CCGCACGTCT GGTTCCTGAT CCTCAACGCC AAGGAAGGCC CCTTTGCCGA CAAGCGCGTC
CGCCAAGCGG CGAATTACGC GATCAACAAA TCCGCGATTG TGAACGATGT GCTTGAGGGC
ACGGCGGAGG TGGCCGCAGG CCCGACCCCG CCCGCCTTTG CCTGGGCCTA CAATGAAACG
CTCGAACCCT ATCCCTATGA CCCCGACAAG GCGCGGGAAC TCCTGGCCGA GGCGGGTGCA
GAAGGGGCGG AGCTGACGTT CTATGTGACC GAGGGCGGCT CCGGCATGCT CGACCCTATC
GCCATGGGCA CTGCCATTCA GGCGGATCTC AACGCCGTGG GGCTGGATGT GAAGATCGAA
ACCTACGAGT GGAACACCTT CCTGGGCGAG GTCAATCCGG GGCTGGAGGG CAAGGCCGAC
ATGGCCGAGA TGGCCTGGAT GACCAACGAC CCCGACACGC TCCCCTTCCT GGCGCTGCGC
ACCGAAGCCT GGCCTGACAA GGGCGGCTTC AACTCCGGCT ATTATTCCAA CCCGAAGGTG
GATGAGCTGT TGGAAGCGGC CCGCGTTGCG ACCGATCAGG ACGAGCGCGC CAAGCTTTAT
CAGGAGATGC AGACCATCGT GCAGGAAGAT GCGCCTTGGG TCTTTGTCGC CAACTGGAAG
CAGAATGCAG TGACCTCGGA TCGGGTGGGC GATTTTGCCC TGCAGCCCTC GTTCTTCCTG
CTGCTCGATG ATGTGACCAA GAACTGA
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| Protein sequence | MKLLGMTRRG AMAAMLATTA MAGVAMGVAP AAAQTPPGVL IVGQIAEPKA LDPAAVTAVN
DFRILMNVYD GLVRYKDGTL EVEPALATDW SISEDGTEYT FTLREGVSFH DGSAFDAEAV
VFNFERMLNE DHPYHNTGPF PLAFFFSAVE SVEAVDDLTV KFKLNAPYAP FLSNLAYPTG
LIVSPEAVKT HGAEFGRNPS GTGAFKFAEW RSNEAVVVEK NPDYWDGAAE LDAVVFRPIT
DANTRTAEML AGGIDLMVEV PPVALSEFQG DAFTVHEQAG PHVWFLILNA KEGPFADKRV
RQAANYAINK SAIVNDVLEG TAEVAAGPTP PAFAWAYNET LEPYPYDPDK ARELLAEAGA
EGAELTFYVT EGGSGMLDPI AMGTAIQADL NAVGLDVKIE TYEWNTFLGE VNPGLEGKAD
MAEMAWMTND PDTLPFLALR TEAWPDKGGF NSGYYSNPKV DELLEAARVA TDQDERAKLY
QEMQTIVQED APWVFVANWK QNAVTSDRVG DFALQPSFFL LLDDVTKN
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