Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1162 |
Symbol | |
ID | 4075948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1251838 |
End bp | 1252422 |
Gene Length | 585 bp |
Protein Length | 194 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638006467 |
Product | HNH endonuclease |
Protein accession | YP_613157 |
Protein GI | 99081003 |
COG category | [V] Defense mechanisms |
COG ID | [COG1403] Restriction endonuclease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00934225 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGACGGAG ACTTCAGGAC AGAATTCGTA AGAGAGCCGC GGGCTCTGAA GCAGCACCCG GCTTTGGTGC TCAATGCGGA TTATCGTCCT TTGTCATACT ATCCCTTGTC ACTCTGGCCA TGGCAGGACG CCGTCAAAGC CGCATGGCTC GACCGGGTTG CCATCGTGGC CGAGTATGAC GAGGTTGTGC GCAGTCCCAG CACCGAAATC CGAATACCTT CGGTTGTGGT ACTGAAAGAT TTTGTCAAAC CCCAAAAGCG CGTGGCCTTC ACGCGCTTTA ATTTATTCTT GCGCGACGAA TTTCGCTGTC AGTACTGCGG CGCAAAGGGA GACCTTACCT TTGATCATGT GGTGCCGCGC GCCTCTGGGG GGATCACCAG CTGGGAGAAC GTGGTCGCGG CCTGCTCGCG TTGCAACCTG AAGAAAGGCT CCAAACCGCT GCACCGTGCG GGCATGTCCC TGCGCAAACC GCCGCGCCGT CCGGGCGCGG AAGAGCTGCG CAATATGGGG CGGAAGTTTC CACCCGGATA CCTGCATGAA AGCTGGATGG ACTACCTCTA TTGGGATAGT GAGCTTGAGG CTTGA
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Protein sequence | MDGDFRTEFV REPRALKQHP ALVLNADYRP LSYYPLSLWP WQDAVKAAWL DRVAIVAEYD EVVRSPSTEI RIPSVVVLKD FVKPQKRVAF TRFNLFLRDE FRCQYCGAKG DLTFDHVVPR ASGGITSWEN VVAACSRCNL KKGSKPLHRA GMSLRKPPRR PGAEELRNMG RKFPPGYLHE SWMDYLYWDS ELEA
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