| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1163 |
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| Symbol | |
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| ID | 4075949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1252474 |
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| End bp | 1253520 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006468 |
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| Product | ornithine cyclodeaminase |
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| Protein accession | YP_613158 |
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| Protein GI | 99081004 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.833995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00431249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCCAAC CTTCCGATAA GGCCCTTGTT CCTTTTGTCA GCGTAGACAA CATGATGCGC
CTCATTCATC ATGTTGGCAT CGAGGATATG ATGCGTGATC TGGCCGACTA TATCGAGGCC
GATTTCAAGC GCTGGGAACT CTTTGACAAG ACCCCCCGCG TCGCCAGCCA TTCCGATGTC
GGCGTGATCG AACTGATGCC GACCTCAGAC GGTGAGGCTT ATGGGTTCAA ATACGTCAAC
GGCCACCCCA AGAACACCTC TGAGGGGCTG CAGACCGTGA CCGCCTTCGG CCTGCTGGCG
GATGTCTATA CCGGCTATCC GGTGCTGTTG ACCGAGATGA CCATTCTGAC CGCGCTGCGC
ACCGCTGCGA CCTCGGCCAT GGTGGCCAAG CACCTCGCTC CCAAAGGTGC CGACACGATG
GCGATGATCG GAAATGGCGC ACAGTCGGAA TTCCAGACGC TGGCGATGAA GGCCATCATC
GGCCTCAAGG CCGTGCGCCT TTATGACAAA GACCCGGCGG CGACCGAGAA ATGTGCACAG
AACCTCGCGG GGCTTGGGGT GGATGTCACC ATCTGCAAAA CCCCCGAAGA GGCGATCGAG
GGCGCCCAGA TCCTCACCAC CTGCACCGCC GACAAGCAAT ATGCCACGAT CCTCACCGAC
AACATGGTCG GCAGCGGTGT GCATATCAAC GCGATTGGCG GCGACTGCCC CGGCAAAACC
GAGCTTGCGC CCGGGATCCT CAACCGGTCG GACGTGTTTG TGGAATACCC GCCGCAAACC
CGCGTCGAGG GTGAGATCCA GCAGATGCCC GAGGATTTTG CCGTGACCGA ACTGTGGGAA
GTGATCTCAG GCCAGAAACC GGGGCGCACC GGTGATCGTC AAATCACGCT CTTTGATAGC
GTCGGCTTTG CCATCGAGGA TTTCTCCGCC CTGCGCTACA TTCGCGACCG GATCAAAGGG
ACGGACTACT TCATCGATCT CGATATGCTG GCGGACCCGG ATGATCCGCG CGATCTCTTT
GGCATGGTGC AGCGCGCCAA GGCCTGA
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| Protein sequence | MTQPSDKALV PFVSVDNMMR LIHHVGIEDM MRDLADYIEA DFKRWELFDK TPRVASHSDV
GVIELMPTSD GEAYGFKYVN GHPKNTSEGL QTVTAFGLLA DVYTGYPVLL TEMTILTALR
TAATSAMVAK HLAPKGADTM AMIGNGAQSE FQTLAMKAII GLKAVRLYDK DPAATEKCAQ
NLAGLGVDVT ICKTPEEAIE GAQILTTCTA DKQYATILTD NMVGSGVHIN AIGGDCPGKT
ELAPGILNRS DVFVEYPPQT RVEGEIQQMP EDFAVTELWE VISGQKPGRT GDRQITLFDS
VGFAIEDFSA LRYIRDRIKG TDYFIDLDML ADPDDPRDLF GMVQRAKA
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