| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0686 |
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| Symbol | ddl |
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| ID | 4077353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 734517 |
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| End bp | 735437 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005983 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_612681 |
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| Protein GI | 99080527 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.280639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000224556 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGGGTGGAG CGAGCGGAAC ACTCCCGAAG GTTGCGATGT TGATGGGTGG CCCCTCGGCC
GAGCGCGAGG TGTCTTTGTC GACGGGGCGC GAATGCGCCC GCGCACTCAG AGGACAGGGC
TACGAGGTGG TCGAGGTCGA TGCAGGCCCC GACCTTGTAG CGCAACTCAA TGACATCAAA
CCGGATGTGG CTTTCAACGC TCTGCATGGG CGTTGGGGAG AAGACGGGTG TGTGCAGGGG
CTTCTTGAGT GGCTGCGCAT CCCCTACACC CATTCCGGCG TGCTGGCCTC TGCACTGGCG
ATGGACAAGG AGCGCTCCAA GGCGGCCTAT CGTACCGCAG GCCTGCCGGT GGTCGACAGT
GTGATCGCCG CCAAAGCAGA CGTGATGGCC CGCCATGTGA TCGCGCCGCC CTATGTGGTG
AAGCCTAATA ATGAGGGTTC GTCGGTTGGC ATTTACATCG TTCACGAGGC CACCAACAGC
CCGCCGCAGC TCTCTGAAGA GATGCCTGCA CAGGTGATGG TCGAGGCCTA TGCGCCTGGT
CGCGAGATGA CAGTGACCGT GATGGGGGAT CGCGCGCTCT GTGTGACCGA CATCCTCACC
GATGGCTGGT ACGACTATGA GGCCAAATAT GCCACGGGTG GCTCGCGCCA TGTATTGCCT
GCCGAGATCC CGGACGAAAT CGCCGATCTA TGCCATGATT ACGCCCTGCG CGCCCATCAG
GTGCTTGGGT GTCGCGGGAT TTCGCGTACG GATTTTCGCT GGGATGAGGC GCGCGGCGCT
GATGGGCTGG TGCTGCTTGA AACCAACACG CAACCGGGGA TGACGCCGAC CTCGTTATCG
CCTGAACAGG CCGAGCATGT TGGTCTCACA TTCGGGCAAC TGTGCGCCTG GTTGGTGGAG
GACGCGTCAT GCGAGCGCTG A
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| Protein sequence | MGGASGTLPK VAMLMGGPSA EREVSLSTGR ECARALRGQG YEVVEVDAGP DLVAQLNDIK
PDVAFNALHG RWGEDGCVQG LLEWLRIPYT HSGVLASALA MDKERSKAAY RTAGLPVVDS
VIAAKADVMA RHVIAPPYVV KPNNEGSSVG IYIVHEATNS PPQLSEEMPA QVMVEAYAPG
REMTVTVMGD RALCVTDILT DGWYDYEAKY ATGGSRHVLP AEIPDEIADL CHDYALRAHQ
VLGCRGISRT DFRWDEARGA DGLVLLETNT QPGMTPTSLS PEQAEHVGLT FGQLCAWLVE
DASCER
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