72 homologs were found in PanDaTox collection
for query gene RPB_1584 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_5702  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  87.63 
 
 
372 aa  697    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.442954 
 
 
-
 
NC_007778  RPB_1584  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  100 
 
 
372 aa  771    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.278871  normal 
 
 
-
 
NC_007958  RPD_1591  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  93.82 
 
 
372 aa  723    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.442624  normal 
 
 
-
 
NC_011004  Rpal_4554  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  91.91 
 
 
373 aa  706    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4159  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  68.01 
 
 
359 aa  517  1.0000000000000001e-145  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3103  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  60.54 
 
 
368 aa  483  1e-135  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1563  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  62.16 
 
 
392 aa  483  1e-135  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.246626  n/a   
 
 
-
 
NC_009832  Spro_1044  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  62.26 
 
 
368 aa  479  1e-134  Serratia proteamaculans 568  Bacteria  normal  normal  0.131119 
 
 
-
 
NC_013421  Pecwa_3299  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  59.46 
 
 
368 aa  474  1e-132  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1011  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  59.46 
 
 
368 aa  474  1e-132  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2912  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  58.11 
 
 
368 aa  462  1e-129  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0246  Methionine synthase vitamin-B12 independent  60.87 
 
 
371 aa  458  9.999999999999999e-129  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.489924  n/a   
 
 
-
 
NC_009436  Ent638_1987  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  58.92 
 
 
367 aa  459  9.999999999999999e-129  Enterobacter sp. 638  Bacteria  normal  normal  0.130415 
 
 
-
 
NC_008254  Meso_2698  methionine synthase, vitamin-B12 independent  47.73 
 
 
373 aa  372  1e-102  Chelativorans sp. BNC1  Bacteria  normal  0.0426462  n/a   
 
 
-
 
NC_008148  Rxyl_1586  methionine synthase, vitamin-B12 independent  49.2 
 
 
371 aa  369  1e-101  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1745  Methionine synthase vitamin-B12 independent  50.54 
 
 
373 aa  365  1e-100  Variovorax paradoxus S110  Bacteria  normal  0.963683  n/a   
 
 
-
 
NC_007948  Bpro_3388  methionine synthase, vitamin-B12 independent  50.68 
 
 
377 aa  367  1e-100  Polaromonas sp. JS666  Bacteria  normal  0.101975  normal  0.0229793 
 
 
-
 
NC_013159  Svir_36700  methionine synthase II (cobalamin-independent)  49.33 
 
 
373 aa  358  9e-98  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.829252  normal  0.784973 
 
 
-
 
NC_013730  Slin_1559  Methionine synthase vitamin-B12 independent  49.19 
 
 
369 aa  357  1.9999999999999998e-97  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_1870  methionine synthase, vitamin-B12 independent  48.8 
 
 
378 aa  356  3.9999999999999996e-97  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3379  Methionine synthase vitamin-B12 independent  49.33 
 
 
376 aa  355  6.999999999999999e-97  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.101236  n/a   
 
 
-
 
NC_008530  LGAS_1661  hypothetical protein  47.57 
 
 
366 aa  349  5e-95  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_1081  methionine synthase, vitamin-B12 independent  45.24 
 
 
379 aa  345  7e-94  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.351458  n/a   
 
 
-
 
NC_008531  LEUM_1801  methionine synthase II (cobalamin-independent)  46.56 
 
 
375 aa  328  7e-89  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1718  hypothetical protein  42.67 
 
 
378 aa  322  8e-87  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3283  Methionine synthase vitamin-B12 independent  42.75 
 
 
394 aa  317  2e-85  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1803  hypothetical protein  42.74 
 
 
375 aa  314  1.9999999999999998e-84  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0752  hypothetical protein  42.59 
 
 
369 aa  311  1e-83  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.751192  n/a   
 
 
-
 
NC_013203  Apar_0268  Methionine synthase vitamin-B12 independent  43.47 
 
 
375 aa  310  2.9999999999999997e-83  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_1190  methionine synthase II (cobalamin-independent)  38.61 
 
 
385 aa  275  1.0000000000000001e-72  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2926  Methionine synthase vitamin-B12 independent  38.99 
 
 
367 aa  258  9e-68  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3115  Methionine synthase vitamin-B12 independent  38.24 
 
 
366 aa  256  4e-67  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0933  methionine synthase (B12-independent)  37.1 
 
 
369 aa  228  2e-58  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.254746  n/a   
 
 
-
 
BN001303  ANIA_05019  Methionine synthase, vitamin-B12 independent, putative (AFU_orthologue; AFUA_3G12060)  34.26 
 
 
438 aa  221  1.9999999999999999e-56  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.807041 
 
 
-
 
NC_013171  Apre_1254  MetE protein  34.03 
 
 
385 aa  192  1e-47  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009954  Cmaq_0585  methionine synthase vitamin-B12 independent  25.91 
 
 
388 aa  104  3e-21  Caldivirga maquilingensis IC-167  Archaea  normal  0.246635  hitchhiker  0.00634375 
 
 
-
 
NC_009714  CHAB381_1170  5-methyltetrahydropteroyltriglutamate-- homocystei ne methyltransferase  25.75 
 
 
388 aa  89  1e-16  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2516  methionine synthase, vitamin-B12 independent  24.02 
 
 
340 aa  88.2  2e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.57162 
 
 
-
 
NC_009767  Rcas_2758  methionine synthase vitamin-B12 independent  23.12 
 
 
340 aa  82.8  0.000000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  decreased coverage  0.000302857  normal 
 
 
-
 
NC_010525  Tneu_0945  methionine synthase vitamin-B12 independent  25.21 
 
 
384 aa  80.5  0.00000000000004  Thermoproteus neutrophilus V24Sta  Archaea  normal  0.8649  hitchhiker  0.000170069 
 
 
-
 
NC_012029  Hlac_2108  methionine synthase  23.33 
 
 
356 aa  79.7  0.00000000000007  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.112744  normal  0.0912449 
 
 
-
 
NC_008701  Pisl_0030  methionine synthase, vitamin-B12 independent  23.55 
 
 
384 aa  78.2  0.0000000000002  Pyrobaculum islandicum DSM 4184  Archaea  normal  normal 
 
 
-
 
NC_009073  Pcal_0648  methionine synthase (B12-independent)  24.09 
 
 
384 aa  76.6  0.0000000000006  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_013158  Huta_0080  methionine synthase  23.04 
 
 
350 aa  74.3  0.000000000003  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0497366  n/a   
 
 
-
 
NC_013922  Nmag_1089  Methionine synthase vitamin-B12 independent  23.2 
 
 
366 aa  72.4  0.00000000001  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009376  Pars_1072  methionine synthase, vitamin-B12 independent  23.12 
 
 
384 aa  71.6  0.00000000002  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal  0.564481 
 
 
-
 
NC_011661  Dtur_1757  methionine synthase  24.71 
 
 
342 aa  67.8  0.0000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2396  Methionine synthase vitamin-B12 independent  22.38 
 
 
358 aa  66.2  0.0000000009  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013730  Slin_5820  Methionine synthase vitamin-B12 independent  22.38 
 
 
342 aa  62.4  0.00000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.392769 
 
 
-
 
NC_013202  Hmuk_2667  methionine synthase  23.08 
 
 
355 aa  62.4  0.00000001  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009954  Cmaq_0981  methionine synthase vitamin-B12 independent  24.79 
 
 
393 aa  61.2  0.00000003  Caldivirga maquilingensis IC-167  Archaea  normal  normal 
 
 
-
 
NC_009440  Msed_2248  methionine synthase  20.71 
 
 
331 aa  58.2  0.0000003  Metallosphaera sedula DSM 5348  Archaea  normal  0.88722  normal  0.0178602 
 
 
-
 
NC_013169  Ksed_04810  methionine synthase II (cobalamin-independent)  32.29 
 
 
404 aa  55.1  0.000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0581869  normal 
 
 
-
 
CP001800  Ssol_1385  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  21.11 
 
 
332 aa  53.9  0.000005  Sulfolobus solfataricus 98/2  Archaea  normal  0.25974  n/a   
 
 
-
 
NC_008697  Noca_4810  methionine synthase (B12-independent)  22.92 
 
 
370 aa  53.1  0.000008  Nocardioides sp. JS614  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2409  methionine synthase, vitamin-B12 independent  22.51 
 
 
377 aa  52.8  0.00001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1991  methionine synthase, vitamin-B12 independent  23.16 
 
 
390 aa  50.8  0.00004  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2808  Methionine synthase II (cobalamin-independent)- like protein  24.25 
 
 
395 aa  50.4  0.00004  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010815  Glov_3721  Methionine synthase vitamin-B12 independent  21.02 
 
 
365 aa  50.4  0.00005  Geobacter lovleyi SZ  Bacteria  normal  0.0129115  normal  0.3687 
 
 
-
 
NC_013595  Sros_8776  MetE  22.54 
 
 
367 aa  50.4  0.00005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0521  methionine synthase, vitamin-B12 independent  22.51 
 
 
361 aa  48.9  0.0001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1122  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  21.61 
 
 
755 aa  47.4  0.0004  Ammonifex degensii KC4  Bacteria  normal  0.0904662  n/a   
 
 
-
 
NC_013131  Caci_4334  Methionine synthase vitamin-B12 independent  22.62 
 
 
354 aa  45.4  0.001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0520376  normal  0.182105 
 
 
-
 
NC_011761  AFE_0288  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  20.7 
 
 
784 aa  45.4  0.001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0465  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  20.7 
 
 
784 aa  45.4  0.001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.0070963 
 
 
-
 
NC_009486  Tpet_1489  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  20.24 
 
 
735 aa  45.1  0.002  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.00335848  n/a   
 
 
-
 
NC_013037  Dfer_2113  Methionine synthase vitamin-B12 independent  22.07 
 
 
353 aa  44.7  0.002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.044306  normal  0.413093 
 
 
-
 
NC_009674  Bcer98_2704  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  19.88 
 
 
762 aa  43.9  0.005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.277209  n/a   
 
 
-
 
NC_006680  CNK02310  5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, putative  21.13 
 
 
763 aa  43.5  0.006  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  n/a   
 
 
-
 
NC_010816  BLD_0538  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  25.82 
 
 
767 aa  43.1  0.008  Bifidobacterium longum DJO10A  Bacteria  normal  0.952319  n/a   
 
 
-
 
NC_007614  Nmul_A1493  hypothetical protein  24.06 
 
 
333 aa  43.1  0.009  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.574311  n/a   
 
 
-
 
NC_008527  LACR_1368  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  21.98 
 
 
757 aa  42.7  0.01  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
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