47 homologs were found in PanDaTox collection
for query gene Pnec_1208 on replicon NC_010531
Organism: Polynucleobacter necessarius subsp. necessarius STIR1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010531  Pnec_1208  formate dehydrogenase, subunit FdhD  100 
 
 
109 aa  220  4.9999999999999996e-57  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  hitchhiker  0.00000012099  normal 
 
 
-
 
NC_009379  Pnuc_0648  formate dehydrogenase, subunit FdhD  88.79 
 
 
276 aa  194  4.0000000000000005e-49  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2176  formate dehydrogenase subunit FdhD  70 
 
 
291 aa  146  8e-35  Ralstonia pickettii 12D  Bacteria  normal  0.60851  normal  0.0520829 
 
 
-
 
NC_010682  Rpic_2580  formate dehydrogenase subunit FdhD  70 
 
 
291 aa  146  8e-35  Ralstonia pickettii 12J  Bacteria  normal  0.437396  normal  0.264505 
 
 
-
 
NC_007347  Reut_A0687  formate dehydrogenase, subunit FdhD  67 
 
 
276 aa  140  6e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2367  FDHD protein  66 
 
 
291 aa  139  1.9999999999999998e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0478854 
 
 
-
 
NC_007973  Rmet_2756  formate dehydrogenase subunit FdhD  61.68 
 
 
278 aa  132  1.9999999999999998e-30  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000145311  normal 
 
 
-
 
NC_008781  Pnap_0839  formate dehydrogenase, subunit FdhD  58.59 
 
 
290 aa  120  4e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.145713  normal 
 
 
-
 
NC_008782  Ajs_3459  formate dehydrogenase, subunit FdhD  55 
 
 
296 aa  118  3e-26  Acidovorax sp. JS42  Bacteria  normal  normal  0.215556 
 
 
-
 
NC_011992  Dtpsy_2786  formate dehydrogenase subunit FdhD  55 
 
 
296 aa  118  3e-26  Acidovorax ebreus TPSY  Bacteria  normal  0.0374953  n/a   
 
 
-
 
NC_007908  Rfer_3256  formate dehydrogenase, subunit FdhD  56.57 
 
 
280 aa  117  7e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.340615  n/a   
 
 
-
 
NC_008825  Mpe_A1176  putative fdhD protein  54.37 
 
 
299 aa  114  6e-25  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.108793 
 
 
-
 
NC_007948  Bpro_0942  formate dehydrogenase, subunit FdhD  56 
 
 
319 aa  112  2.0000000000000002e-24  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3715  formate dehydrogenase subunit FdhD  55.79 
 
 
275 aa  108  2.0000000000000002e-23  Thauera sp. MZ1T  Bacteria  normal  0.351414  n/a   
 
 
-
 
NC_010524  Lcho_3723  formate dehydrogenase family accessory protein FdhD  51 
 
 
303 aa  106  9.000000000000001e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.521477 
 
 
-
 
NC_012791  Vapar_4057  formate dehydrogenase, subunit FdhD  55.21 
 
 
290 aa  105  2e-22  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1909  formate dehydrogenase, subunit FdhD  48.54 
 
 
300 aa  104  5e-22  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02271  hypothetical protein  53.47 
 
 
276 aa  103  1e-21  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0053  formate dehydrogenase, subunit FdhD  48.48 
 
 
281 aa  100  7e-21  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1126  formate dehydrogenase accessory protein  52.48 
 
 
337 aa  99.8  1e-20  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003500  formate dehydrogenase chain D  52.48 
 
 
277 aa  99.8  1e-20  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3910  formate dehydrogenase accessory protein FdhD, putative  48.54 
 
 
298 aa  98.6  2e-20  Shewanella sp. ANA-3  Bacteria  normal  0.131875  normal 
 
 
-
 
NC_008321  Shewmr4_3714  formate dehydrogenase, subunit FdhD  47.96 
 
 
298 aa  97.1  7e-20  Shewanella sp. MR-4  Bacteria  normal  0.272943  normal  0.525322 
 
 
-
 
NC_008322  Shewmr7_3785  formate dehydrogenase, subunit FdhD  47.96 
 
 
298 aa  97.1  7e-20  Shewanella sp. MR-7  Bacteria  normal  0.0292467  normal  0.549187 
 
 
-
 
NC_010506  Swoo_4819  formate dehydrogenase subunit FdhD  47 
 
 
298 aa  96.3  1e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0239  formate dehydrogenase subunit FdhD  45.19 
 
 
290 aa  92.4  2e-18  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000144632 
 
 
-
 
NC_009665  Shew185_4100  formate dehydrogenase subunit FdhD  45.19 
 
 
296 aa  92.4  2e-18  Shewanella baltica OS185  Bacteria  normal  0.015822  n/a   
 
 
-
 
NC_009997  Sbal195_4218  formate dehydrogenase subunit FdhD  45.19 
 
 
296 aa  92.4  2e-18  Shewanella baltica OS195  Bacteria  normal  0.072328  normal  0.431807 
 
 
-
 
NC_009052  Sbal_4130  formate dehydrogenase subunit FdhD  44.23 
 
 
296 aa  92  3e-18  Shewanella baltica OS155  Bacteria  normal  0.142791  n/a   
 
 
-
 
NC_008700  Sama_3619  formate dehydrogenase accessory protein FdhD, putative  46.15 
 
 
282 aa  92  3e-18  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0343  formate dehydrogenase, subunit FdhD  43.43 
 
 
298 aa  91.7  3e-18  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00229888  n/a   
 
 
-
 
NC_009831  Ssed_4427  formate dehydrogenase, subunit FdhD  44 
 
 
295 aa  90.5  7e-18  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0051  formate dehydrogenase, subunit FdhD  44.68 
 
 
284 aa  90.1  9e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_4143  formate dehydrogenase subunit FdhD  44.09 
 
 
280 aa  85.9  2e-16  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4503  formate dehydrogenase accessory protein FdhD, putative  52.11 
 
 
249 aa  84  7e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I1448  putative formate dehydrogenase accessory protein  48.75 
 
 
283 aa  84  7e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5485  formate dehydrogenase family accessory protein FdhD  38.38 
 
 
290 aa  67.8  0.00000000005  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2431  formate dehydrogenase family accessory protein FdhD  40 
 
 
297 aa  63.9  0.0000000007  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3132  formate dehydrogenase family accessory protein FdhD  38.1 
 
 
296 aa  63.2  0.000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3756  formate dehydrogenase family accessory protein FdhD  42.86 
 
 
293 aa  62.8  0.000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3282  putative formate dehydrogenase accessory protein FdhD  41.18 
 
 
294 aa  58.9  0.00000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.610509  normal 
 
 
-
 
NC_009253  Dred_2876  formate dehydrogenase family accessory protein FdhD  36.54 
 
 
262 aa  45.1  0.0003  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0487293  n/a   
 
 
-
 
NC_013205  Aaci_1923  formate dehydrogenase family accessory protein FdhD  32.84 
 
 
280 aa  41.6  0.004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1033  formate dehydrogenase family accessory protein FdhD  30.61 
 
 
266 aa  40.8  0.005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0364714  n/a   
 
 
-
 
NC_011832  Mpal_1513  formate dehydrogenase subunit FdhD  30.77 
 
 
247 aa  41.2  0.005  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.0566283 
 
 
-
 
NC_007575  Suden_0817  formate dehydrogenase accessory protein  26.92 
 
 
276 aa  40  0.009  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.0766349  n/a   
 
 
-
 
NC_008554  Sfum_1205  formate dehydrogenase family accessory protein FdhD  28.36 
 
 
303 aa  40  0.01  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.495294 
 
 
-
 
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