| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4427 |
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| Symbol | |
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| ID | 5611663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5410511 |
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| End bp | 5411398 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935397 |
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| Product | formate dehydrogenase, subunit FdhD |
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| Protein accession | YP_001476157 |
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| Protein GI | 157377557 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1526] Uncharacterized protein required for formate dehydrogenase activity |
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| TIGRFAM ID | [TIGR00129] formate dehydrogenase family accessory protein FdhD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCTC CATCGAATGT TCAAAATGAG TTACTAGCCT TGAGCCAGCA CAAACCCAGC
TTAATCAAAA CCGATACCGA TGTGCCGCTA ACTATTGCCG TTAACGCCAT AGATGAGAAT
GGAGAACGCG TCGAGAAGCA CATTGCTTGC GAACGTCCGC TCATGGTCTA CCTTAACTGG
CGCCCTATCG TGACCTTGAT GACCTTAGGT GCACGGGCCG AATCCCTCGC GCTGGGATAT
CTGAAAAACC AAGGCTTCAT CTCCGACCTT AAGCAATTAG AGTCTGTGAT TGTCGACTGG
GATGTGAACT CGGCAGCCAT TATCACATCG GAAAGCACGG CTGACTTAGA GGAGAAGCTC
TCTGAGAAGA CCGTCACCAC TGGTTGTGGC CAGGGCACTG TTTACGGCGG TTTCATGGAT
GGACTCGATG ATATCGTTCT GCCTCAACCA CAACTCAAAC AGAGCATGAT CTATAGCCTG
CTGAAAAATA TCAGCACTTA TAATGAAACC TACAAGAATG CCGGTGCAGT TCATGGTTGT
GGACTGTGTC AGGATGATCA AATAGTCGAC TTTGTTGAAG ATGTGGGTCG TCATAATGCG
GTAGATACGC TCGCCGGTGA GATGTGGCTA AAGCAAGACA CAGGCAATAA CAAACTCTTT
TACACCACCG GGCGTCTGAC CTCAGAGATG GTGATAAAAG TGGCTAAGAT GGGCATACCC
GTCGTGCTGT CGCGCAGCGG TGCAACTCAG ATGGGACTGG AACTCGCACA AAAACTTGGC
ATCACCATGA TTGCCAGGGC AAAAGGCAAG CACTTCCTCA TCTACCATGG TGACGAAAAT
GTCGAACTCG ATGCGATGCC ACCTAAACGT CCGGCTAAAA CCAGTTAA
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| Protein sequence | MISPSNVQNE LLALSQHKPS LIKTDTDVPL TIAVNAIDEN GERVEKHIAC ERPLMVYLNW
RPIVTLMTLG ARAESLALGY LKNQGFISDL KQLESVIVDW DVNSAAIITS ESTADLEEKL
SEKTVTTGCG QGTVYGGFMD GLDDIVLPQP QLKQSMIYSL LKNISTYNET YKNAGAVHGC
GLCQDDQIVD FVEDVGRHNA VDTLAGEMWL KQDTGNNKLF YTTGRLTSEM VIKVAKMGIP
VVLSRSGATQ MGLELAQKLG ITMIARAKGK HFLIYHGDEN VELDAMPPKR PAKTS
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