95 homologs were found in PanDaTox collection
for query gene Msil_2386 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_2386  protein of unknown function DUF201  100 
 
 
381 aa  757    Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_6003  protein of unknown function DUF201  43.75 
 
 
376 aa  222  9.999999999999999e-57  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.866607  n/a   
 
 
-
 
NC_007484  Noc_0260  hypothetical protein  34.38 
 
 
403 aa  217  2e-55  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2165  protein of unknown function DUF201  41.6 
 
 
412 aa  214  1.9999999999999998e-54  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.111476  normal  0.292956 
 
 
-
 
NC_009720  Xaut_3534  hypothetical protein  42.59 
 
 
391 aa  213  2.9999999999999995e-54  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.72291 
 
 
-
 
NC_010505  Mrad2831_0529  hypothetical protein  44.66 
 
 
383 aa  211  2e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.865986 
 
 
-
 
NC_010511  M446_5779  hypothetical protein  42.58 
 
 
384 aa  201  1.9999999999999998e-50  Methylobacterium sp. 4-46  Bacteria  normal  0.0168364  normal 
 
 
-
 
NC_010725  Mpop_1781  protein of unknown function DUF201  40.58 
 
 
378 aa  197  3e-49  Methylobacterium populi BJ001  Bacteria  normal  0.366711  normal 
 
 
-
 
NC_010172  Mext_1830  hypothetical protein  39.53 
 
 
374 aa  195  1e-48  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1659  hypothetical protein  35.48 
 
 
354 aa  178  2e-43  Methylobacillus flagellatus KT  Bacteria  normal  0.256819  normal  0.444616 
 
 
-
 
NC_002977  MCA2862  hypothetical protein  32.19 
 
 
380 aa  157  4e-37  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2608  hypothetical protein  33.16 
 
 
386 aa  156  7e-37  Methylibium petroleiphilum PM1  Bacteria  normal  0.0133551  normal 
 
 
-
 
NC_010625  Bphy_5947  hypothetical protein  33.24 
 
 
393 aa  153  5e-36  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.0095496 
 
 
-
 
NC_012791  Vapar_3083  protein of unknown function DUF201  31.56 
 
 
380 aa  147  3e-34  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6483  hypothetical protein  33.68 
 
 
407 aa  133  5e-30  Burkholderia phymatum STM815  Bacteria  normal  normal  0.422069 
 
 
-
 
NC_007952  Bxe_B2432  hypothetical protein  34.24 
 
 
402 aa  131  2.0000000000000002e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.171151  normal 
 
 
-
 
NC_010524  Lcho_3151  hypothetical protein  34.74 
 
 
415 aa  111  3e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008553  Mthe_1666  hypothetical protein  30.62 
 
 
355 aa  104  2e-21  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_009712  Mboo_1278  hypothetical protein  29.6 
 
 
357 aa  96.7  7e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.422818  normal  0.140099 
 
 
-
 
NC_011832  Mpal_2010  protein of unknown function DUF201  27.86 
 
 
360 aa  87.8  3e-16  Methanosphaerula palustris E1-9c  Archaea  normal  0.493163  normal  0.206685 
 
 
-
 
NC_008942  Mlab_0457  hypothetical protein  29.72 
 
 
357 aa  85.9  0.000000000000001  Methanocorpusculum labreanum Z  Archaea  normal  0.764291  normal 
 
 
-
 
NC_009051  Memar_1523  hypothetical protein  29.02 
 
 
357 aa  79.7  0.00000000000007  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0197  hypothetical protein  25.52 
 
 
391 aa  77  0.0000000000006  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007796  Mhun_2798  hypothetical protein  25.51 
 
 
366 aa  73.2  0.000000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.105487 
 
 
-
 
NC_007955  Mbur_0371  hypothetical protein  24.15 
 
 
290 aa  61.2  0.00000003  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.0000731332  n/a   
 
 
-
 
NC_009953  Sare_3064  hypothetical protein  32.32 
 
 
441 aa  55.1  0.000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000514586 
 
 
-
 
NC_014148  Plim_2022  protein of unknown function DUF201  26.1 
 
 
425 aa  53.9  0.000005  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3074  carbamoyl phosphate synthase large subunit  23.91 
 
 
1073 aa  52.8  0.00001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.581012  n/a   
 
 
-
 
NC_007643  Rru_A2317  pyruvate carboxylase  29.08 
 
 
1146 aa  52.8  0.00001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0976  carbamoyl phosphate synthase large subunit  22.63 
 
 
1073 aa  52.4  0.00001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3577  carbamoyl phosphate synthase large subunit  22.99 
 
 
1072 aa  52  0.00002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.108884 
 
 
-
 
NC_009634  Mevan_1032  hypothetical protein  20.98 
 
 
353 aa  51.6  0.00002  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_013456  VEA_004478  carbamoyl-phosphate synthase large chain  24.77 
 
 
1077 aa  49.7  0.00009  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3403  carbamoyl phosphate synthase large subunit  22.63 
 
 
1072 aa  49.3  0.0001  Shewanella sediminis HAW-EB3  Bacteria  normal  decreased coverage  0.000056188 
 
 
-
 
NC_009632  SaurJH1_1287  carbamoyl phosphate synthase large subunit  23.28 
 
 
1057 aa  49.3  0.0001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.867856  n/a   
 
 
-
 
NC_009487  SaurJH9_1262  carbamoyl phosphate synthase large subunit  23.28 
 
 
1057 aa  49.3  0.0001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1207  carbamoyl-phosphate synthase large subunit  24.21 
 
 
1059 aa  48.1  0.0002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0980  pyruvate carboxylase  48.89 
 
 
1147 aa  47.8  0.0003  Geobacillus sp. WCH70  Bacteria  normal  0.125957  n/a   
 
 
-
 
NC_007796  Mhun_0571  hypothetical protein  30.67 
 
 
299 aa  48.1  0.0003  Methanospirillum hungatei JF-1  Archaea  normal  0.0897117  normal 
 
 
-
 
NC_009092  Shew_2838  carbamoyl phosphate synthase large subunit  23.19 
 
 
1073 aa  47.8  0.0003  Shewanella loihica PV-4  Bacteria  normal  0.144627  normal  0.047859 
 
 
-
 
NC_007802  Jann_1063  carbamoyl phosphate synthase large subunit  34.12 
 
 
1110 aa  47.4  0.0004  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_1149  hypothetical protein  18.53 
 
 
414 aa  47.4  0.0004  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_007413  Ava_3022  phosphoribosylglycinamide formyltransferase 2  26.6 
 
 
391 aa  47.8  0.0004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.289298  normal 
 
 
-
 
NC_008044  TM1040_0632  carbamoyl phosphate synthase large subunit  25.67 
 
 
1120 aa  47  0.0005  Ruegeria sp. TM1040  Bacteria  normal  0.298922  normal  0.175677 
 
 
-
 
NC_007517  Gmet_1774  carbamoyl-phosphate synthase large subunit  22.51 
 
 
1081 aa  47  0.0006  Geobacter metallireducens GS-15  Bacteria  decreased coverage  0.00000157385  normal  0.0854041 
 
 
-
 
NC_011138  MADE_02243  carbamoyl phosphate synthase large subunit  25.3 
 
 
1073 aa  47  0.0006  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0985  carbamoyl phosphate synthase large subunit  24.6 
 
 
1106 aa  46.6  0.0007  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.557617  normal 
 
 
-
 
NC_009457  VC0395_A1967  carbamoyl phosphate synthase large subunit  23.98 
 
 
1076 aa  46.2  0.0008  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0320  carbamoyl-phosphate synthase, large subunit  24.61 
 
 
1078 aa  46.6  0.0008  Desulfohalobium retbaense DSM 5692  Bacteria  unclonable  0.000000336143  normal 
 
 
-
 
NC_008228  Patl_2214  carbamoyl phosphate synthase large subunit  22.26 
 
 
1072 aa  46.2  0.0009  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.173726  n/a   
 
 
-
 
NC_011663  Sbal223_1052  carbamoyl phosphate synthase large subunit  23.91 
 
 
1074 aa  46.2  0.001  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000022294 
 
 
-
 
NC_009997  Sbal195_3525  carbamoyl phosphate synthase large subunit  23.91 
 
 
1074 aa  46.2  0.001  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3931  carbamoyl phosphate synthase large subunit  24.86 
 
 
1072 aa  46.2  0.001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2079  carbamoyl-phosphate synthase, large subunit  25 
 
 
1082 aa  46.2  0.001  Geobacter lovleyi SZ  Bacteria  normal  0.0359545  n/a   
 
 
-
 
NC_009675  Anae109_2072  carbamoyl phosphate synthase large subunit  24.08 
 
 
1083 aa  45.8  0.001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.471557 
 
 
-
 
NC_009665  Shew185_3400  carbamoyl phosphate synthase large subunit  23.91 
 
 
1074 aa  46.2  0.001  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
BN001304  ANIA_11009  pyruvate carboxylase, putative (AFU_orthologue; AFUA_5G07570)  25.83 
 
 
653 aa  46.2  0.001  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.114359 
 
 
-
 
NC_009438  Sputcn32_2939  carbamoyl phosphate synthase large subunit  23.55 
 
 
1074 aa  46.2  0.001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3304  carbamoyl phosphate synthase large subunit  23.91 
 
 
1074 aa  46.2  0.001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1047  carbamoyl phosphate synthase large subunit  20.83 
 
 
1065 aa  45.1  0.002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3994  pyruvate carboxylase  44.44 
 
 
1148 aa  45.1  0.002  Bacillus cereus ATCC 10987  Bacteria  normal  0.882525  n/a   
 
 
-
 
NC_004347  SO_1142  carbamoyl phosphate synthase large subunit  23.55 
 
 
1074 aa  45.4  0.002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B1190  pyruvate carboxylase  44.44 
 
 
1148 aa  45.1  0.002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A4050  pyruvate carboxylase  44.44 
 
 
1148 aa  45.1  0.002  Bacillus cereus B4264  Bacteria  normal  0.898796  n/a   
 
 
-
 
NC_013204  Elen_1670  carbamoyl-phosphate synthase, large subunit  24.87 
 
 
1078 aa  45.4  0.002  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.00809225 
 
 
-
 
NC_011658  BCAH187_A4065  pyruvate carboxylase  44.44 
 
 
1148 aa  45.1  0.002  Bacillus cereus AH187  Bacteria  normal  0.0164116  n/a   
 
 
-
 
NC_013411  GYMC61_1598  carbamoyl phosphate synthase large subunit  27.92 
 
 
1042 aa  45.1  0.002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011126  HY04AAS1_1377  Carbamoyl-phosphate synthase L chain ATP-binding  30.48 
 
 
441 aa  45.1  0.002  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1276  carbamoyl-phosphate synthase, large subunit  22.51 
 
 
1081 aa  45.4  0.002  Geobacter sulfurreducens PCA  Bacteria  normal  0.104945  n/a   
 
 
-
 
NC_006274  BCZK3707  pyruvate carboxylase  44.44 
 
 
1148 aa  45.1  0.002  Bacillus cereus E33L  Bacteria  normal  0.863258  n/a   
 
 
-
 
NC_010571  Oter_0679  carbamoyl-phosphate synthase, large subunit  21.83 
 
 
1095 aa  45.1  0.002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_2070  carbamoyl phosphate synthase large subunit  25.4 
 
 
1029 aa  45.4  0.002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1864  carbamoyl-phosphate synthase, large subunit  22.51 
 
 
1082 aa  45.1  0.002  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000611023  n/a   
 
 
-
 
NC_008340  Mlg_1981  carbamoyl-phosphate synthase large subunit  24.6 
 
 
1078 aa  44.7  0.003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  decreased coverage  0.00635498 
 
 
-
 
NC_008700  Sama_2503  carbamoyl phosphate synthase large subunit  22.83 
 
 
1076 aa  44.7  0.003  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2308  carbamoyl-phosphate synthase, large subunit  24.08 
 
 
1082 aa  44.7  0.003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009952  Dshi_2639  carbamoyl phosphate synthase large subunit  25.65 
 
 
1105 aa  44.7  0.003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.239677  normal 
 
 
-
 
NC_011146  Gbem_1900  carbamoyl-phosphate synthase, large subunit  24.08 
 
 
1082 aa  44.7  0.003  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00662116  n/a   
 
 
-
 
NC_005957  BT9727_3628  carbamoyl phosphate synthase large subunit  24.32 
 
 
1072 aa  44.3  0.004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_46320  putative pyruvate carboxylase  31.85 
 
 
1095 aa  43.5  0.005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.948302  normal  0.0234216 
 
 
-
 
NC_007498  Pcar_1612  carbamoyl-phosphate synthase large subunit  23.64 
 
 
1084 aa  43.9  0.005  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000225246  n/a   
 
 
-
 
NC_013889  TK90_0699  carbamoyl-phosphate synthase, large subunit  23.29 
 
 
1077 aa  43.5  0.006  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.133334  normal  0.0796001 
 
 
-
 
NC_010184  BcerKBAB4_3773  pyruvate carboxylase  44.44 
 
 
1148 aa  43.5  0.006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.333  n/a   
 
 
-
 
NC_011145  AnaeK_2118  carbamoyl phosphate synthase large subunit  24.06 
 
 
1077 aa  43.5  0.006  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0934  acetyl-CoA carboxylase, biotin carboxylase  24.27 
 
 
458 aa  43.5  0.006  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0996  carbamoyl phosphate synthase large subunit  21.9 
 
 
1075 aa  43.5  0.006  Shewanella denitrificans OS217  Bacteria  normal  0.846706  n/a   
 
 
-
 
NC_011891  A2cp1_2208  carbamoyl phosphate synthase large subunit  23.53 
 
 
1077 aa  43.1  0.007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1729  carbamoyl phosphate synthase large subunit  23.53 
 
 
1077 aa  43.1  0.007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3690  pyruvate carboxylase  42.22 
 
 
1148 aa  43.1  0.008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4157  pyruvate carboxylase  42.22 
 
 
1148 aa  43.1  0.008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.820084  n/a   
 
 
-
 
NC_009674  Bcer98_2649  pyruvate carboxylase  44.44 
 
 
1148 aa  43.1  0.008  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00733169  n/a   
 
 
-
 
NC_007604  Synpcc7942_1379  acetyl-CoA carboxylase biotin carboxylase subunit  43.48 
 
 
453 aa  43.1  0.008  Synechococcus elongatus PCC 7942  Bacteria  normal  0.34087  normal 
 
 
-
 
NC_011773  BCAH820_3962  pyruvate carboxylase  42.22 
 
 
1148 aa  43.1  0.008  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS3859  pyruvate carboxylase  42.22 
 
 
1148 aa  43.1  0.008  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0062  acetyl-CoA carboxylase biotin carboxylase subunit  26.42 
 
 
448 aa  43.1  0.009  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
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