| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1967 |
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| Symbol | carB |
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| ID | 5136051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2107281 |
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| End bp | 2110511 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533424 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_001217891 |
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| Protein GI | 147673654 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0027] Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase)
[COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACTGACAT TCAAAGCATC CTTATCCTTG GTGCGGGTCC AATTGTTATC
GGTCAGGCTT GTGAGTTTGA CTACTCAGGC GCGCAAGCGT GTAAAGCCCT GCGCGAAGAG
GGTTACCGCG TTATTCTGGT TAACTCAAAC CCAGCGACCA TCATGACTGA CCCAGAAATG
GCCGATGCGA CTTACATCGA GCCTATCCAC TGGGAAGTGG TGCGTAAGAT CATCGAAAAA
GAGCGCCCAG ATGCGATTTT GCCCACCATG GGCGGCCAGA CTGCGCTGAA CTGTGCGCTG
GCACTCGAAA AACATGGCGT ATTGGCTGAG TTTGGCGTTG AGATGATCGG CGCAACCGCC
GATGCGATTG ATAAAGCGGA AGACCGCTCA CGCTTTGATA AAGCGATGAA ATCAATCGGC
CTAGAGTGTC CTCGCGCTGA TACCGCAAAA AGCATGGAAG AAGCGTACAA AGTCCTCGAT
ATGGTCGGCT TCCCATGTAT CATCCGTCCT TCTTTCACCA TGGGCGGCAG CGGTGGTGGT
ATCGCTTACA ACCGTGAAGA GTTTGAAGAA ATCTGTACTC GCGGTCTGGA TCTTTCACCG
ACCAATGAAC TGCTGATCGA TGAATCGCTG ATTGGTTGGA AAGAGTACGA GATGGAAGTG
GTGCGTGATA AGAACGATAA CTGCATCATC GTCTGTGCGA TTGAAAACTT CGACCCAATG
GGCATCCACA CGGGTGACTC GATCACAGTC GCTCCAGCGC AAACCCTGAC GGACAAAGAA
TACCAAATCA TGCGTAACGC CTCTTTGGCG GTACTGCGTG AAATCGGCGT AGAAACCGGC
GGTTCAAACG TTCAGTTTGG TATCAACCCG AAAGATGGTC GCATGGTGAT CATCGAGATG
AACCCACGTG TGTCGCGCTC TTCGGCGTTG GCTTCCAAAG CCACCGGTTT CCCAATTGCG
AAAGTGGCGG CCAAACTGGC GGTGGGTTTC ACTCTCGATG AGTTGATGAA CGACATCACA
GGCGGCGCAA CGCCAGCTTC GTTCGAACCG ACCATCGACT ACGTGGTCAC TAAGATTCCT
CGTTTCAACT TCGAAAAATT CGCCGGTGCC AATGACCGCC TGACCACACA AATGAAGTCA
GTCGGTGAAG TGATGGCGAT TGGTCGTAAC CAACAAGAAT CACTGCAAAA AGCACTGCGC
GGCTTGGAAG TCGGTGCGGC TGGTCTGGAT GAGAAAGTGG ATCTGGACGC GCCAGATGCC
CTGACCAAAA TTCGTTATGA GCTGAAAGAA GCAGGCGCAG AGCGTATTTG GTACATCGCG
GATGCCTTCC GTGCCGGTAT GTCAGTGGAT GGGGTATTTA ACCTGACCAA CATTGATCGC
TGGTTCCTAG TGCAAATCGA AGAACTGGTG AAGCTTGAAG CCGAAGTGAA AGCCGGTGGC
TTTGCGGGCT TGAACCAAGA CGTATTGCGT AAGATGAAGC GCAAAGGCTT CTCTGATGCG
CGTCTGTCAA AACTGCTGGG CGTTAGCGAA AACGAAATCC GTCGTCTGCG TGACCAATAC
AACATCCACC CAGTTTACAA GCGTGTGGAT ACCTGCGCGG CAGAATTTAA GTCAGATACC
GCTTACATGT ACTCCACGTA TGATGAAGAG TGTGAAGCCA ATCCGACTGA CAAAGACAAG
ATCATGGTGC TGGGCGGTGG TCCAAACCGT ATCGGTCAAG GTATCGAGTT TGACTACTGC
TGTGTACACG CCGCGCTTGC ACTGCGTGAA GATGGTTACG AAACCATCAT GGTTAACTGT
AACCCAGAAA CCGTATCAAC CGATTACGAC ACCTCAGATC GCCTCTACTT TGAGCCTGTA
ACTCTAGAGG ATGTGCTGGC TATCGTGCGT GTTGAGAAGC CAAAAGGCGT GATCGTGCAG
TACGGCGGTC AAACACCACT GAAACTGGCG CGAGCGCTGG AAGCGGCTGG CGTACCTGTG
ATTGGTACCA GCCCAGATGC GATTGACCGC GCTGAAGACC GTGAACGTTT CCAACAAGCG
GTACAGCGTT TAGGCCTCAA ACAGCCAGAC AACGCAACCG TAACCGCTAT CGAGCAAGCG
ATTGAGAAGT CGCGTGAAAT CGGTTTCCCA CTCGTAGTTC GCCCCTCTTA TGTTCTGGGT
GGCCGTGCGA TGGAGATTGT GTACGATGAG CAAGATCTGC GTCGTTACTT CAACGAAGCG
GTGAGCGTGT CGAATGAATC ACCAGTTCTG CTGGATCGCT TCCTTGATGA TGCAACCGAA
GTGGACGTGG ATGCGATTTG TGACGGTGAG CGCGTGGTGA TTGGCGGCAT CATGGAGCAC
ATTGAACAAG CGGGTGTTCA CTCAGGTGAC TCAGCCTGTT CTCTGCCGGC TTACACCTTG
AGCCAAGAAA TCCAAGACAA GATGCGTGAG CAAGTTGAGA AGTTGGCATT TGAACTCGGT
GTTCGTGGCC TGATGAACAT TCAGTTTGCA GTCAAAGACA ACGAAGTTTA CCTGATTGAA
GTAAACCCAC GTGCTGCGCG TACTGTGCCG TTTGTTTCTA AAGCAACCGG TGCTCCGCTG
GCGAAAATCG CGGCGCGCGT GATGGTTGGA CAAACTCTGG AGCAACAAGG CTTCACCAAA
GAGATCATTC CACCTTACTA CTCAGTTAAA GAAGTGGTTC TGCCGTTCAA CAAGTTCCCG
GGGGTTGACC CACTGCTTGG CCCTGAAATG CGCTCAACCG GTGAAGTGAT GGGTGTGGGT
GCCACGTTTG CTGAAGCCTA TGCTAAAGCA GAGTTGGGCT GTGGCTCGGT TTACCCTGAA
GGTGGTCGTG CGCTACTTTC GGTGCGTGAA GGTGACAAAC AGCGTGTAGT GGATCTGGCT
TCTAAGCTAG TGAAACTGGG TTACCAGTTG GATGCGACTC ACGGTACTGC AGTGATTCTG
GGCGAAGCGG GCATCAACCC ACGTCTGGTT AACAAAGTGC ATGAAGGTCG TCCACACATT
CTGGATCGCA TCAAAAACCA CGAGTACACC TACATTGTGA ACACGGCTTC TGGCCGCCAA
GCAATTGAAG ACTCAAAAGT ACTGCGCCGT GGTGCATTGG CTCACAAAGT GAACTACACC
ACCACACTGA ACGCCGCCTT CGCAACTTGT ATGTCACACA CGGCGGATGC CAAAGCATCC
GTCACTTCAG TACAAGAGCT GCATGCGCGT GTAAAAGCGA ACCAAGCTTA A
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| Protein sequence | MPKRTDIQSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRKIIEK ERPDAILPTM GGQTALNCAL ALEKHGVLAE FGVEMIGATA
DAIDKAEDRS RFDKAMKSIG LECPRADTAK SMEEAYKVLD MVGFPCIIRP SFTMGGSGGG
IAYNREEFEE ICTRGLDLSP TNELLIDESL IGWKEYEMEV VRDKNDNCII VCAIENFDPM
GIHTGDSITV APAQTLTDKE YQIMRNASLA VLREIGVETG GSNVQFGINP KDGRMVIIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGF TLDELMNDIT GGATPASFEP TIDYVVTKIP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRN QQESLQKALR GLEVGAAGLD EKVDLDAPDA
LTKIRYELKE AGAERIWYIA DAFRAGMSVD GVFNLTNIDR WFLVQIEELV KLEAEVKAGG
FAGLNQDVLR KMKRKGFSDA RLSKLLGVSE NEIRRLRDQY NIHPVYKRVD TCAAEFKSDT
AYMYSTYDEE CEANPTDKDK IMVLGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLAIVR VEKPKGVIVQ YGGQTPLKLA RALEAAGVPV
IGTSPDAIDR AEDRERFQQA VQRLGLKQPD NATVTAIEQA IEKSREIGFP LVVRPSYVLG
GRAMEIVYDE QDLRRYFNEA VSVSNESPVL LDRFLDDATE VDVDAICDGE RVVIGGIMEH
IEQAGVHSGD SACSLPAYTL SQEIQDKMRE QVEKLAFELG VRGLMNIQFA VKDNEVYLIE
VNPRAARTVP FVSKATGAPL AKIAARVMVG QTLEQQGFTK EIIPPYYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG ATFAEAYAKA ELGCGSVYPE GGRALLSVRE GDKQRVVDLA
SKLVKLGYQL DATHGTAVIL GEAGINPRLV NKVHEGRPHI LDRIKNHEYT YIVNTASGRQ
AIEDSKVLRR GALAHKVNYT TTLNAAFATC MSHTADAKAS VTSVQELHAR VKANQA
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