More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1255 on replicon NC_008044
Organism: Ruegeria sp. TM1040



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_2357  acyl-CoA dehydrogenase  82.37 
 
 
406 aa  681    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1085  glutaryl-CoA dehydrogenase  78.15 
 
 
394 aa  637    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4671  acyl-CoA dehydrogenase domain-containing protein  84.1 
 
 
395 aa  685    Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.0018836  normal  0.0173504 
 
 
-
 
NC_009667  Oant_2170  acyl-CoA dehydrogenase domain-containing protein  79.18 
 
 
394 aa  644    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2955  acyl-CoA dehydrogenase domain-containing protein  84.5 
 
 
403 aa  701    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0522083  normal 
 
 
-
 
NC_007493  RSP_1295  putative acyl-CoA dehydrogenase  84.25 
 
 
403 aa  697    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2728  acyl-CoA dehydrogenase domain-containing protein  84.25 
 
 
403 aa  699    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.335629  normal  0.940576 
 
 
-
 
NC_011004  Rpal_1284  acyl-CoA dehydrogenase domain protein  78.14 
 
 
404 aa  650    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1649  acyl-CoA dehydrogenase domain-containing protein  78.01 
 
 
415 aa  637    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.246483 
 
 
-
 
NC_007778  RPB_1162  Acyl-CoA dehydrogenase-like  78.14 
 
 
404 aa  648    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0873897  normal  0.0990997 
 
 
-
 
NC_007802  Jann_2813  acyl-CoA dehydrogenase-like  78.93 
 
 
404 aa  648    Jannaschia sp. CCS1  Bacteria  normal  0.207157  normal 
 
 
-
 
NC_007802  Jann_3069  acyl-CoA dehydrogenase-like  81 
 
 
404 aa  674    Jannaschia sp. CCS1  Bacteria  normal  0.66075  normal  0.0926601 
 
 
-
 
NC_007925  RPC_4297  acyl-CoA dehydrogenase-like  78.39 
 
 
404 aa  645    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.296437  normal  0.0883749 
 
 
-
 
NC_007958  RPD_1264  acyl-CoA dehydrogenase-like  78.39 
 
 
404 aa  650    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.51833  normal  0.675418 
 
 
-
 
NC_008044  TM1040_1255  acyl-CoA dehydrogenase-like  100 
 
 
407 aa  841    Ruegeria sp. TM1040  Bacteria  normal  0.229688  normal 
 
 
-
 
NC_009485  BBta_2451  glutaryl-CoA dehydrogenase  79.7 
 
 
404 aa  662    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2481  acyl-CoA dehydrogenase-like  82.52 
 
 
406 aa  659    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5095  acyl-CoA dehydrogenase domain-containing protein  78.97 
 
 
409 aa  644    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.124298  normal  0.0779135 
 
 
-
 
NC_008347  Mmar10_1661  acyl-CoA dehydrogenase domain-containing protein  84.48 
 
 
406 aa  718    Maricaulis maris MCS10  Bacteria  normal  0.0842003  normal  0.909495 
 
 
-
 
NC_009511  Swit_0822  acyl-CoA dehydrogenase domain-containing protein  79.28 
 
 
394 aa  649    Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4412  acyl-CoA dehydrogenase domain-containing protein  76.85 
 
 
403 aa  636    Paracoccus denitrificans PD1222  Bacteria  normal  0.620152  normal  0.546759 
 
 
-
 
NC_007964  Nham_0753  acyl-CoA dehydrogenase-like  76.63 
 
 
404 aa  632  1e-180  Nitrobacter hamburgensis X14  Bacteria  normal  0.202646  n/a   
 
 
-
 
NC_007406  Nwi_0608  acyl-CoA dehydrogenase  74.87 
 
 
404 aa  629  1e-179  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1268  acyl-CoA dehydrogenase domain protein  76.98 
 
 
413 aa  624  1e-178  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.831834  n/a   
 
 
-
 
NC_009427  Saro_3419  acyl-CoA dehydrogenase domain-containing protein  77.89 
 
 
394 aa  625  1e-178  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0350417  n/a   
 
 
-
 
NC_011988  Avi_5908  glutaryl-CoA dehydrogenase  77.63 
 
 
391 aa  618  1e-176  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4233  acyl-CoA dehydrogenase domain-containing protein  73.91 
 
 
394 aa  602  1.0000000000000001e-171  Sphingomonas wittichii RW1  Bacteria  normal  0.0274104  normal 
 
 
-
 
NC_009720  Xaut_4712  acyl-CoA dehydrogenase domain-containing protein  74.55 
 
 
397 aa  600  1e-170  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.145534 
 
 
-
 
NC_008048  Sala_2879  acyl-CoA dehydrogenase-like protein  73.96 
 
 
400 aa  591  1e-168  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3018  acyl-CoA dehydrogenase-like protein  73.52 
 
 
391 aa  590  1e-167  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0900  acyl-CoA dehydrogenase domain-containing protein  73.01 
 
 
391 aa  590  1e-167  Shewanella loihica PV-4  Bacteria  normal  normal  0.461251 
 
 
-
 
NC_010551  BamMC406_0711  acyl-CoA dehydrogenase domain-containing protein  73.08 
 
 
395 aa  586  1e-166  Burkholderia ambifaria MC40-6  Bacteria  normal  0.245364  normal 
 
 
-
 
NC_007510  Bcep18194_A3906  Acyl-CoA dehydrogenase-like  72.82 
 
 
395 aa  587  1e-166  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2796  acyl-CoA dehydrogenase-like protein  72.75 
 
 
391 aa  586  1e-166  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3322  acyl-CoA dehydrogenase domain-containing protein  73.01 
 
 
393 aa  584  1e-166  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0694  acyl-CoA dehydrogenase domain-containing protein  72.82 
 
 
395 aa  585  1e-166  Burkholderia ambifaria AMMD  Bacteria  normal  0.324229  n/a   
 
 
-
 
NC_002947  PP_0158  acyl-CoA dehydrogenase domain-containing protein  72.75 
 
 
393 aa  581  1.0000000000000001e-165  Pseudomonas putida KT2440  Bacteria  normal  0.276992  hitchhiker  0.0000982042 
 
 
-
 
NC_010084  Bmul_2570  acyl-CoA dehydrogenase domain-containing protein  72.31 
 
 
395 aa  582  1.0000000000000001e-165  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.216949  normal 
 
 
-
 
NC_007204  Psyc_0805  putative glutaryl-CoA dehydrogenase  71.54 
 
 
394 aa  582  1.0000000000000001e-165  Psychrobacter arcticus 273-4  Bacteria  normal  0.75963  normal  0.310028 
 
 
-
 
NC_010681  Bphyt_0776  acyl-CoA dehydrogenase domain protein  72.12 
 
 
396 aa  581  1.0000000000000001e-165  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.567358 
 
 
-
 
NC_007951  Bxe_A3904  putative glutaryl-CoA dehydrogenase  72.63 
 
 
396 aa  583  1.0000000000000001e-165  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.107167 
 
 
-
 
NC_007969  Pcryo_0815  glutaryl-CoA dehydrogenase  71.54 
 
 
394 aa  582  1.0000000000000001e-165  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.991169 
 
 
-
 
NC_008060  Bcen_0330  acyl-CoA dehydrogenase-like  72.56 
 
 
395 aa  583  1.0000000000000001e-165  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0782  acyl-CoA dehydrogenase domain-containing protein  72.56 
 
 
395 aa  583  1.0000000000000001e-165  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.61313  normal 
 
 
-
 
NC_008542  Bcen2424_0813  acyl-CoA dehydrogenase domain-containing protein  72.56 
 
 
395 aa  583  1.0000000000000001e-165  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0845  glutaryl-CoA dehydrogenase  72.05 
 
 
395 aa  579  1e-164  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0177  acyl-CoA dehydrogenase domain-containing protein  72.75 
 
 
393 aa  580  1e-164  Pseudomonas putida F1  Bacteria  hitchhiker  0.00130576  normal  0.936713 
 
 
-
 
NC_006348  BMA2064  glutaryl-CoA dehydrogenase  72.05 
 
 
395 aa  579  1e-164  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0818  acyl-CoA dehydrogenase domain-containing protein  72.42 
 
 
392 aa  578  1e-164  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.559131  n/a   
 
 
-
 
NC_009074  BURPS668_3185  putative glutaryl-CoA dehydrogenase  72.05 
 
 
395 aa  579  1e-164  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1931  putative glutaryl-CoA dehydrogenase  72.05 
 
 
395 aa  579  1e-164  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0117  Acyl-CoA dehydrogenase-like  72.75 
 
 
393 aa  578  1e-164  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0899419  normal 
 
 
-
 
NC_008836  BMA10229_A2678  glutaryl-CoA dehydrogenase  72.05 
 
 
395 aa  579  1e-164  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2653  acyl-CoA dehydrogenase-like protein  72.12 
 
 
397 aa  580  1e-164  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_3222  putative glutaryl-CoA dehydrogenase  72.05 
 
 
395 aa  579  1e-164  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0230126  n/a   
 
 
-
 
NC_010506  Swoo_1033  acyl-CoA dehydrogenase domain-containing protein  71.65 
 
 
391 aa  579  1e-164  Shewanella woodyi ATCC 51908  Bacteria  normal  0.355643  normal 
 
 
-
 
NC_010501  PputW619_5068  acyl-CoA dehydrogenase domain-containing protein  72.24 
 
 
393 aa  578  1e-164  Pseudomonas putida W619  Bacteria  hitchhiker  0.000324963  normal  0.0231586 
 
 
-
 
NC_008781  Pnap_1133  acyl-CoA dehydrogenase domain-containing protein  72.47 
 
 
398 aa  579  1e-164  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4667  glutaryl-CoA dehydrogenase  72.35 
 
 
394 aa  576  1.0000000000000001e-163  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0984  acyl-CoA dehydrogenase domain-containing protein  70.1 
 
 
391 aa  575  1.0000000000000001e-163  Shewanella sediminis HAW-EB3  Bacteria  normal  0.374892  normal 
 
 
-
 
NC_007347  Reut_A0805  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  71.36 
 
 
397 aa  575  1.0000000000000001e-163  Ralstonia eutropha JMP134  Bacteria  normal  0.268381  n/a   
 
 
-
 
NC_007434  BURPS1710b_3237  glutaryl-CoA dehydrogenase  71.79 
 
 
395 aa  577  1.0000000000000001e-163  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2438  acyl-CoA dehydrogenase domain-containing protein  71.36 
 
 
396 aa  576  1.0000000000000001e-163  Burkholderia phymatum STM815  Bacteria  normal  0.269814  normal 
 
 
-
 
NC_010322  PputGB1_0175  acyl-CoA dehydrogenase domain-containing protein  72.24 
 
 
393 aa  577  1.0000000000000001e-163  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.000000017739  normal  0.388373 
 
 
-
 
NC_013440  Hoch_4889  acyl-CoA dehydrogenase domain protein  71.72 
 
 
392 aa  576  1.0000000000000001e-163  Haliangium ochraceum DSM 14365  Bacteria  normal  0.378984  normal  0.687816 
 
 
-
 
NC_003295  RSc0756  glutaryl-CoA dehydrogenase oxidoreductase  71.36 
 
 
435 aa  573  1.0000000000000001e-162  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.366151 
 
 
-
 
NC_009656  PSPA7_0549  glutaryl-CoA dehydrogenase  71.72 
 
 
393 aa  572  1.0000000000000001e-162  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1536  acyl-CoA dehydrogenase domain-containing protein  71.91 
 
 
398 aa  572  1.0000000000000001e-162  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1671  acyl-CoA dehydrogenase-like  71.46 
 
 
398 aa  571  1.0000000000000001e-162  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_05840  glutaryl-CoA dehydrogenase  71.72 
 
 
393 aa  573  1.0000000000000001e-162  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0706  acyl-CoA dehydrogenase domain protein  71.36 
 
 
397 aa  573  1.0000000000000001e-162  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0783515 
 
 
-
 
NC_012856  Rpic12D_0772  acyl-CoA dehydrogenase domain protein  70.84 
 
 
397 aa  570  1e-161  Ralstonia pickettii 12D  Bacteria  normal  0.268888  normal  0.15145 
 
 
-
 
NC_008752  Aave_1982  acyl-CoA dehydrogenase domain-containing protein  69.57 
 
 
399 aa  568  1e-161  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0500873  hitchhiker  0.0048757 
 
 
-
 
NC_009439  Pmen_4429  acyl-CoA dehydrogenase domain-containing protein  71.21 
 
 
392 aa  570  1e-161  Pseudomonas mendocina ymp  Bacteria  normal  0.0167364  normal  0.43046 
 
 
-
 
NC_007005  Psyr_5014  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  70.69 
 
 
393 aa  569  1e-161  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.905782  normal  0.169624 
 
 
-
 
NC_008782  Ajs_2979  acyl-CoA dehydrogenase domain-containing protein  71.36 
 
 
398 aa  568  1e-161  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2005  glutaryl-CoA dehydrogenase  74.93 
 
 
395 aa  570  1e-161  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.518246  n/a   
 
 
-
 
NC_012791  Vapar_0118  acyl-CoA dehydrogenase domain protein  70.41 
 
 
399 aa  569  1e-161  Variovorax paradoxus S110  Bacteria  normal  0.360682  n/a   
 
 
-
 
NC_011992  Dtpsy_2407  acyl-CoA dehydrogenase domain protein  71.61 
 
 
398 aa  570  1e-161  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0821  acyl-CoA dehydrogenase domain-containing protein  69.27 
 
 
409 aa  564  1e-160  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.384147  normal  0.990129 
 
 
-
 
NC_004578  PSPTO_5461  acyl-CoA dehydrogenase, putative  70.44 
 
 
393 aa  565  1e-160  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.119164  n/a   
 
 
-
 
NC_010002  Daci_2207  acyl-CoA dehydrogenase domain-containing protein  70.08 
 
 
398 aa  567  1e-160  Delftia acidovorans SPH-1  Bacteria  normal  0.312955  normal  0.110735 
 
 
-
 
NC_007908  Rfer_4070  acyl-CoA dehydrogenase-like  69.57 
 
 
398 aa  564  1.0000000000000001e-159  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0539  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  67.53 
 
 
391 aa  559  1e-158  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6742  acyl-CoA dehydrogenase domain protein  69.59 
 
 
395 aa  554  1e-157  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.224399  normal 
 
 
-
 
NC_011662  Tmz1t_0419  acyl-CoA dehydrogenase domain protein  69.04 
 
 
395 aa  555  1e-157  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3170  glutaryl-CoA dehydrogenase  69.33 
 
 
422 aa  557  1e-157  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.129371 
 
 
-
 
NC_007651  BTH_I1390  glutaryl-CoA dehydrogenase  71.54 
 
 
395 aa  552  1e-156  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1734  acyl-CoA dehydrogenase domain-containing protein  70.08 
 
 
398 aa  553  1e-156  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.177428 
 
 
-
 
NC_011366  Rleg2_5829  acyl-CoA dehydrogenase domain protein  69.33 
 
 
395 aa  553  1e-156  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.628432  normal 
 
 
-
 
NC_012560  Avin_24930  Glutaryl-CoA dehydrogenase  69.15 
 
 
395 aa  549  1e-155  Azotobacter vinelandii DJ  Bacteria  normal  0.440339  n/a   
 
 
-
 
NC_007925  RPC_1037  acyl-CoA dehydrogenase-like  69.21 
 
 
396 aa  547  1e-154  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2130  acyl-CoA dehydrogenase domain-containing protein  68.12 
 
 
394 aa  546  1e-154  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0270955 
 
 
-
 
NC_009484  Acry_0857  acyl-CoA dehydrogenase domain-containing protein  68.04 
 
 
408 aa  541  1e-153  Acidiphilium cryptum JF-5  Bacteria  hitchhiker  0.00258655  n/a   
 
 
-
 
NC_008228  Patl_3993  glutaryl-CoA dehydrogenase  65.98 
 
 
394 aa  540  9.999999999999999e-153  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1193  acyl-CoA dehydrogenase domain-containing protein  69.07 
 
 
394 aa  523  1e-147  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011671  PHATR_25572  predicted protein  60.77 
 
 
470 aa  475  1e-133  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_006692  CNG03020  Glutaryl-CoA dehydrogenase, mitochondrial precursor, putative  58.52 
 
 
426 aa  461  9.999999999999999e-129  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.388117  n/a   
 
 
-
 
NC_013501  Rmar_1436  acyl-CoA dehydrogenase domain protein  58.06 
 
 
415 aa  456  1e-127  Rhodothermus marinus DSM 4252  Bacteria  normal  0.549354  n/a   
 
 
-
 
NC_010531  Pnec_1021  acyl-CoA dehydrogenase domain protein  63.8 
 
 
347 aa  430  1e-119  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.364823  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>