| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1162 |
|---|
| Symbol | |
|---|
| ID | 3910097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1331347 |
|---|
| End bp | 1332561 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637883056 |
|---|
| Product | Acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_484783 |
|---|
| Protein GI | 86748287 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0873897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0990997 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTTC GCGCGCAAAC CAAGGACAAG CCGGCTCCCG CGAGTTTCAA GTGGGACGAC
CCGCTGCTCC TGGAAGATCA GCTCACCGAA GACGAGCGGA TGATCCGCGA CACCGCGCGC
GCCTACGCGC AGGACAAGCT GCTGCCGCGT GTCAGCCAGG CCTATCTCGA AGAGAAGACC
GATCGCGAGA TCTTCAACGA GATGGGCTCG CTCGGCCTGA TCGGCATCAC GCTGCCCGAG
GATTACGGCT GCGCCAATGC CAGCTACGTC GCCTACGGCC TCGTGGCGCG CGAGATCGAG
CGCGTCGATA GCGGCTATCG CTCGATGAAT TCGGTGCAGT CGTCGCTGGT GATGTATCCG
ATCTACGCCT ATGGCGACGA GACCCAGCGT AAGAAATATC TGCCCAAGCT CGCCTCCGGC
GAATGGGTCG GCTGCTTCGG CCTGACCGAG CCCGACGCCG GCTCCGATCC CGGCGGCATG
AAGACCCGCG CCGAGAAGGT CGCCGACGGC TATCGCCTCA CCGGCACCAA GATGTGGATC
TCCAACGCGC CGATCGCCGA CGTGTTCGTG GTGTGGGCGA AGTCGGCCGC GCACGACAAC
CAGATCCGCG GCTTCATCCT CGAGAAGGGC ATGAAGGGCC TGTCGGCGCC GAAGATCGGC
GGCAAGCTCT CGTTGCGCGC CTCGATCACC GGCGAGATCG TGATGGACGG CGTCGTGGTG
CCCGAAGAGG CGCTGCTGCC CAACGTGTCG GGCCTCAAGG GTCCGTTCGG CTGTCTCAAC
CGCGCCCGCT ACGGCATCTC CTGGGGCGTG CTCGGCGCCG CCGAGGATTG CTTCCAGCGC
GCCCGGCAGT ACACGCTCGA CCGCAAGCAG TTCAACCGGC CGCTCGCCGC CACCCAGCTG
GTGCAGAAGA AGCTCGCCGA CATGGAGACC GAGATCACGC TCGGCCTGCA GGCGTCGTTG
CGCGTCGGCC GGCTGATGGA CGAAGGCCGG GTCGCGCCGG AAATGATCTC GATCGTCAAG
CGCAACAATT GCGGCAAGGC GCTCGACATC GCCCGCGTCG CCCGCGACAT GCACGGCGGC
AACGGCATCC AGATCGAGTA CCACGTGATG CGCCACGCCC AGAACCTCGA GACGGTCAAC
ACCTACGAGG GCACCCACGA CGTCCACGCT TTGATCATCG GCCGCGCCAT CACCGGGCTG
CAGGCGTTTT CGTAA
|
|---|
| Protein sequence | MSVRAQTKDK PAPASFKWDD PLLLEDQLTE DERMIRDTAR AYAQDKLLPR VSQAYLEEKT
DREIFNEMGS LGLIGITLPE DYGCANASYV AYGLVAREIE RVDSGYRSMN SVQSSLVMYP
IYAYGDETQR KKYLPKLASG EWVGCFGLTE PDAGSDPGGM KTRAEKVADG YRLTGTKMWI
SNAPIADVFV VWAKSAAHDN QIRGFILEKG MKGLSAPKIG GKLSLRASIT GEIVMDGVVV
PEEALLPNVS GLKGPFGCLN RARYGISWGV LGAAEDCFQR ARQYTLDRKQ FNRPLAATQL
VQKKLADMET EITLGLQASL RVGRLMDEGR VAPEMISIVK RNNCGKALDI ARVARDMHGG
NGIQIEYHVM RHAQNLETVN TYEGTHDVHA LIIGRAITGL QAFS
|
|---|
| |