Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4671 |
Symbol | |
ID | 5318128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1182856 |
End bp | 1184043 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640776469 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | YP_001313401 |
Protein GI | 150376805 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0018836 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0173504 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCGGCA AAAGCCAATT CCAATGGGAC GATCCGTTCC TGCTCGAGGA CCAGCTGACG GAAGACGAGC GGATGATCCG GGACACCGCG CGCGCCTATG CTCAGGAGAA GCTGCAGCCG CGGGTGATCG AAGCTTACCG GGAAGAGACG ACGGATCCGG CGATCTTCCG CGAAATGGGC GATCTCGGCC TTCTCGGGGT CACCGTGCCC GACAGCTACG GTGGTGTCGG TGCCTCCTAC GTCGCCTACG GCCTGGTCGC ACGAGAGGTG GAGCGCGTCG ATTCCGGCTA TCGCTCAATG ATGAGCGTGC AATCATCGCT CGTCGTCTAT CCGATCTACG CCTATGGCTC CGAGGATCAG AAGCGGAAAT ACCTGCCAAA GCTTATCAGC GGCGAGTGGA TCGGCTGCTT CGGATTGACG GAGCCGGATG CGGGCTCCGA TCCGGCCGGC ATGAAGACGA GGGCGATCAG GACCGAGGGC GGCTATCGTC TGATTGGCTC GAAGATGTGG ATCTCCAACG CGCCGCTCGC CGATGTCTTC GTCGTCTGGG CGAAGTCGGA AGCGCATGAC AACGCCATCC GTGGCTTCGT GCTGGAGAAA GGTACCAAGG GACTTTCGGC GCCGAAGATT GCGGGCAAGC TTTCGCTGCG CGCCTCGATC ACGGGGGAAA TCGTCCTCGA CAATGTCGAG GTCGGCGAGG AGGCGCTGCT GCCTGATGTC GAGGGACTGA AGGGGCCCTT TGGCTGCCTC AACCGCGCCC GCTACGGCAT TTCCTGGGGT GCGCTCGGGG CCGCCGAATT CTGCTGGCAC GCAGCGCGTC AATACGGTCT GGATCGCAAG CAGTTCAACA GGCCGCTCGC GCAGACCCAG CTGTTCCAGA AGAAGCTCGC GGACATGCAG ACCGAGATCG CGCTCGGGCT GCAGGGCTCG CTGAGAGTCG GACGGCTGAT GGACGAGGGC CGGATGGCAC CGGAGATGAT CTCGATCGTC AAGCGCAACA ATTGCGGCAA GGCACTCGAT ATAGCGCGGC AAGCCCGCGA TATGCATGGC GGCAACGGCA TTTCCGAGGA ATATCAGGTC ATGCGGCACA TGCTTAACCT CGAGACTGTC AATACCTACG AGGGTACGCA TGACGTGCAT GCCCTGATCC TCGGCCGCGC CCAGACCGGG CTGCAGGCCT TCTTCTGA
|
Protein sequence | MAGKSQFQWD DPFLLEDQLT EDERMIRDTA RAYAQEKLQP RVIEAYREET TDPAIFREMG DLGLLGVTVP DSYGGVGASY VAYGLVAREV ERVDSGYRSM MSVQSSLVVY PIYAYGSEDQ KRKYLPKLIS GEWIGCFGLT EPDAGSDPAG MKTRAIRTEG GYRLIGSKMW ISNAPLADVF VVWAKSEAHD NAIRGFVLEK GTKGLSAPKI AGKLSLRASI TGEIVLDNVE VGEEALLPDV EGLKGPFGCL NRARYGISWG ALGAAEFCWH AARQYGLDRK QFNRPLAQTQ LFQKKLADMQ TEIALGLQGS LRVGRLMDEG RMAPEMISIV KRNNCGKALD IARQARDMHG GNGISEEYQV MRHMLNLETV NTYEGTHDVH ALILGRAQTG LQAFF
|
| |