Gene Smed_4671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4671 
Symbol 
ID5318128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1182856 
End bp1184043 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content62% 
IMG OID640776469 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001313401 
Protein GI150376805 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0018836 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0173504 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGGCA AAAGCCAATT CCAATGGGAC GATCCGTTCC TGCTCGAGGA CCAGCTGACG 
GAAGACGAGC GGATGATCCG GGACACCGCG CGCGCCTATG CTCAGGAGAA GCTGCAGCCG
CGGGTGATCG AAGCTTACCG GGAAGAGACG ACGGATCCGG CGATCTTCCG CGAAATGGGC
GATCTCGGCC TTCTCGGGGT CACCGTGCCC GACAGCTACG GTGGTGTCGG TGCCTCCTAC
GTCGCCTACG GCCTGGTCGC ACGAGAGGTG GAGCGCGTCG ATTCCGGCTA TCGCTCAATG
ATGAGCGTGC AATCATCGCT CGTCGTCTAT CCGATCTACG CCTATGGCTC CGAGGATCAG
AAGCGGAAAT ACCTGCCAAA GCTTATCAGC GGCGAGTGGA TCGGCTGCTT CGGATTGACG
GAGCCGGATG CGGGCTCCGA TCCGGCCGGC ATGAAGACGA GGGCGATCAG GACCGAGGGC
GGCTATCGTC TGATTGGCTC GAAGATGTGG ATCTCCAACG CGCCGCTCGC CGATGTCTTC
GTCGTCTGGG CGAAGTCGGA AGCGCATGAC AACGCCATCC GTGGCTTCGT GCTGGAGAAA
GGTACCAAGG GACTTTCGGC GCCGAAGATT GCGGGCAAGC TTTCGCTGCG CGCCTCGATC
ACGGGGGAAA TCGTCCTCGA CAATGTCGAG GTCGGCGAGG AGGCGCTGCT GCCTGATGTC
GAGGGACTGA AGGGGCCCTT TGGCTGCCTC AACCGCGCCC GCTACGGCAT TTCCTGGGGT
GCGCTCGGGG CCGCCGAATT CTGCTGGCAC GCAGCGCGTC AATACGGTCT GGATCGCAAG
CAGTTCAACA GGCCGCTCGC GCAGACCCAG CTGTTCCAGA AGAAGCTCGC GGACATGCAG
ACCGAGATCG CGCTCGGGCT GCAGGGCTCG CTGAGAGTCG GACGGCTGAT GGACGAGGGC
CGGATGGCAC CGGAGATGAT CTCGATCGTC AAGCGCAACA ATTGCGGCAA GGCACTCGAT
ATAGCGCGGC AAGCCCGCGA TATGCATGGC GGCAACGGCA TTTCCGAGGA ATATCAGGTC
ATGCGGCACA TGCTTAACCT CGAGACTGTC AATACCTACG AGGGTACGCA TGACGTGCAT
GCCCTGATCC TCGGCCGCGC CCAGACCGGG CTGCAGGCCT TCTTCTGA
 
Protein sequence
MAGKSQFQWD DPFLLEDQLT EDERMIRDTA RAYAQEKLQP RVIEAYREET TDPAIFREMG 
DLGLLGVTVP DSYGGVGASY VAYGLVAREV ERVDSGYRSM MSVQSSLVVY PIYAYGSEDQ
KRKYLPKLIS GEWIGCFGLT EPDAGSDPAG MKTRAIRTEG GYRLIGSKMW ISNAPLADVF
VVWAKSEAHD NAIRGFVLEK GTKGLSAPKI AGKLSLRASI TGEIVLDNVE VGEEALLPDV
EGLKGPFGCL NRARYGISWG ALGAAEFCWH AARQYGLDRK QFNRPLAQTQ LFQKKLADMQ
TEIALGLQGS LRVGRLMDEG RMAPEMISIV KRNNCGKALD IARQARDMHG GNGISEEYQV
MRHMLNLETV NTYEGTHDVH ALILGRAQTG LQAFF