| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A0845 |
|---|
| Symbol | gcdH |
|---|
| ID | 4681691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008785 |
|---|
| Strand | - |
|---|
| Start bp | 842142 |
|---|
| End bp | 843329 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639845120 |
|---|
| Product | glutaryl-CoA dehydrogenase |
|---|
| Protein accession | YP_992186 |
|---|
| Protein GI | 121600521 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCG CAACCTTCCA CTGGGACGAT CCGCTGCTGC TCGACCAGCA GCTCACCGAC
GACGAGCGCA TGGTGCGCGA CGCCGCGCAC GCTTACGCGC AAGGCAAGCT CGCGCCGCGC
GTGACGGAAG CGTTCCGCCA CGAGACCACC GACGCGGCGA TCTTCCGCGA AATGGGCGAG
ATCGGCCTCC TCGGCCCGAC GATCCCCGAG CAGTACGGCG GCCCCGGCCT CGACTACGTG
AGTTACGGGC TCATCGCGCG CGAAGTCGAG CGCGTCGATT CGGGTTATCG GTCGATGATG
TCGGTGCAAT CGTCGCTCGT GATGGTGCCG ATCTTCGAAT TCGGCTCCGA CGCGCAGAAG
GAAAAGTACC TGCCGAAGCT CGCGACGGGC GAATGGATCG GCTGCTTCGG GCTGACCGAG
CCGAACCACG GCTCCGACCC CGGCAGCATG GTCACGCGCG CGAGGAAGGT GCCGGGCGGG
TACTCGCTGT CCGGCTCGAA GATGTGGATC ACGAATTCGC CGATCGCCGA TGTGTTCGTC
GTCTGGGCGA AGCTCGACGA AGACGGCCGC GACGAGATTC GCGGCTTCAT TCTCGAAAAG
GGCTGCAAAG GGCTGTCGGC GCCGGCGATC CACGGCAAGG TGGGGCTGCG CGCGTCGATC
ACGGGTGAAA TCGTGCTCGA CGAAGCGTTC GTCCCCGAAG AGAACATCCT GCCGCACGTG
AAGGGGCTGC GCGGCCCGTT CACGTGCCTG AACTCGGCGC GCTACGGCAT CGCGTGGGGG
GCGCTCGGCG CGGCCGAATC GTGCTGGCAC ATCGCGCGCC AATATGTGCT CGATCGCAAG
CAGTTCGGCC GCCCGCTCGC CGCGAACCAG TTGATCCAGA AGAAGCTCGC CGACATGCAG
ACCGAGATCA CGCTCGGCCT GCAAGGCGTG CTGCGGCTCG GCCGGATGAA GGACGAAGGC
ACCGCCGCCG TCGAGATCAC GTCGATCATG AAGCGCAATT CGTGCGGCAA GGCGCTCGAC
ATCGCCCGCC TCGCCCGCGA CATGCTGGGC GGCAATGGCA TCTCGGACGA ATTCGGCGTC
GCGCGCCACC TCGTGAACCT CGAGGTGGTG AACACGTACG AAGGTACGCA CGACATCCAC
GCGCTGATTC TCGGCCGCGC GCAGACGGGG ATTCAGGCGT TCTTCTGA
|
|---|
| Protein sequence | MAAATFHWDD PLLLDQQLTD DERMVRDAAH AYAQGKLAPR VTEAFRHETT DAAIFREMGE
IGLLGPTIPE QYGGPGLDYV SYGLIAREVE RVDSGYRSMM SVQSSLVMVP IFEFGSDAQK
EKYLPKLATG EWIGCFGLTE PNHGSDPGSM VTRARKVPGG YSLSGSKMWI TNSPIADVFV
VWAKLDEDGR DEIRGFILEK GCKGLSAPAI HGKVGLRASI TGEIVLDEAF VPEENILPHV
KGLRGPFTCL NSARYGIAWG ALGAAESCWH IARQYVLDRK QFGRPLAANQ LIQKKLADMQ
TEITLGLQGV LRLGRMKDEG TAAVEITSIM KRNSCGKALD IARLARDMLG GNGISDEFGV
ARHLVNLEVV NTYEGTHDIH ALILGRAQTG IQAFF
|
|---|
| |