| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1021 |
|---|
| Symbol | |
|---|
| ID | 6183828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 891298 |
|---|
| End bp | 892341 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641671636 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_001797813 |
|---|
| Protein GI | 171463700 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.364823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGTG ACGCGGCTGC AGAATATGCC CAAGGGCGCC TAATGCCGCG CATTCATGAT
GCCTACCGTA ACGAAACAAC TGACCCCGCT ATTTTTCGCG AAATGGGCGA GCTAGGACTC
TTAGGAATCA CCACTCCTGA GCAGTACGGT GGCGCGAATC TGAACTACGT TTCTTATGGC
TTAATTGCTC GTAAAATCGA ACGTGTTGAT TCTGGTTATC GCTCCATGAT GAGTGTGCAG
TCTTCTTTAG TCATGGTTCC AATTAATGAG TTTGGCAGCG AAGCACAAAA ACAAAAGTAC
CTTCCTAAAT TAGCTAGTGG CGAATGGATT GGTTATTTTG GACTGACTGA ACCTAACCAT
GGTTCTGATG CTGGCGGCAT GATTACCCGC GCGAAACAAG TTCCTGGTAG CTTTTCTTTA
ACTGGTTCCA AGATGTGGAT CTCCAACTCC CCGATTGCAG ATGTATTTGT GGTTTGGGCA
AAAAATGATG CAGGCATCAT ACGGGGTTAC ATCCTTGAAA AAGGGATGAA GGGCTTAAGC
GCCCCGAAGA TCTCCGGCAA GATGAGTTTA CGTGCCTCCA TTACCGGTGA AATCGTGATG
GACGAAGTAT TCGTGCCAGC TGAAAATGAA TTCCCTAAAA CTGAAGGGCT CAAAGGCCCA
TTCACCTGCC TTAACTCTGC ACGCTACGGC ATAGCCTGGG GTGCGCTAGG CGCAGCCGAA
TGGTGTTGGT ATGCAACTCG CCAGTACACC ATGGACCGCA AACAATTTGG TAAGCTGCTG
GCTGCCAATC AGCTAATTCA AAAGAAATTG GCTGATATGC AAACTGAAAT CGCTTTAGGC
CTTCAAGGTT GCTTGCGATT GGGTCGCATG AAGGATGAAG GAATTGCCGC CCCAGAGATT
ACCTCCATTA TGAAACGCAA TGATCGAATT AACCAAAAAA ACCAATGTGT GGGGCATGCA
AAGCCAGCTT ATTGTTGGGG CGGCTCATCG ATGCCGATCA AGCTAGCTTT AAAGAAATTC
TCAGCCAAAG CAAGCTTCCA GTAA
|
|---|
| Protein sequence | MVRDAAAEYA QGRLMPRIHD AYRNETTDPA IFREMGELGL LGITTPEQYG GANLNYVSYG
LIARKIERVD SGYRSMMSVQ SSLVMVPINE FGSEAQKQKY LPKLASGEWI GYFGLTEPNH
GSDAGGMITR AKQVPGSFSL TGSKMWISNS PIADVFVVWA KNDAGIIRGY ILEKGMKGLS
APKISGKMSL RASITGEIVM DEVFVPAENE FPKTEGLKGP FTCLNSARYG IAWGALGAAE
WCWYATRQYT MDRKQFGKLL AANQLIQKKL ADMQTEIALG LQGCLRLGRM KDEGIAAPEI
TSIMKRNDRI NQKNQCVGHA KPAYCWGGSS MPIKLALKKF SAKASFQ
|
|---|
| |