More than 300 homologs were found in PanDaTox collection
for query gene TM1040_0953 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_0953  multiple antibiotic resistance (MarC)-related proteins  100 
 
 
207 aa  392  1e-108  Ruegeria sp. TM1040  Bacteria  normal  0.838216  normal 
 
 
-
 
NC_007802  Jann_1818  multiple antibiotic resistance (MarC)-related proteins  67.84 
 
 
205 aa  253  1.0000000000000001e-66  Jannaschia sp. CCS1  Bacteria  normal  normal  0.397202 
 
 
-
 
NC_009428  Rsph17025_1125  multiple antibiotic resistance (MarC)-related protein  60.78 
 
 
207 aa  236  1e-61  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0974003 
 
 
-
 
NC_007493  RSP_2896  multidrug ABC transporter  61.46 
 
 
206 aa  231  4.0000000000000004e-60  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1540  multiple antibiotic resistance (MarC)-related proteins  61.46 
 
 
206 aa  231  4.0000000000000004e-60  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29956  normal 
 
 
-
 
NC_009952  Dshi_1348  multiple antibiotic resistance (MarC)-related protein  65.17 
 
 
208 aa  221  7e-57  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.160191 
 
 
-
 
NC_008686  Pden_0906  multiple antibiotic resistance (MarC)-related proteins  52.76 
 
 
203 aa  201  5e-51  Paracoccus denitrificans PD1222  Bacteria  normal  0.201578  normal  0.0510602 
 
 
-
 
NC_011369  Rleg2_1743  multiple antibiotic resistance (MarC)-related protein  50.25 
 
 
215 aa  172  2.9999999999999996e-42  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.565671  normal  0.375082 
 
 
-
 
NC_011989  Avi_2385  hypothetical protein  46.38 
 
 
209 aa  172  2.9999999999999996e-42  Agrobacterium vitis S4  Bacteria  normal  0.0520514  n/a   
 
 
-
 
NC_008048  Sala_3099  multiple antibiotic resistance (MarC)-related proteins  51.71 
 
 
209 aa  171  5e-42  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.554479  normal 
 
 
-
 
NC_012850  Rleg_1929  multiple antibiotic resistance (MarC)-related protein  48.29 
 
 
215 aa  171  5.999999999999999e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.604403  normal 
 
 
-
 
NC_009636  Smed_1240  multiple antibiotic resistance (MarC)-related protein  44.44 
 
 
209 aa  165  4e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.185324  normal  0.313526 
 
 
-
 
NC_004310  BR1098  hypothetical protein  42.57 
 
 
209 aa  160  1e-38  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1880  multiple antibiotic resistance (MarC)-related protein  41.29 
 
 
209 aa  159  2e-38  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1059  hypothetical protein  42.57 
 
 
209 aa  160  2e-38  Brucella ovis ATCC 25840  Bacteria  normal  0.728304  n/a   
 
 
-
 
NC_009511  Swit_2873  multiple antibiotic resistance (MarC)-related protein  50.49 
 
 
213 aa  159  3e-38  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0453774 
 
 
-
 
NC_009667  Oant_2183  multiple antibiotic resistance (MarC)-related protein  43.07 
 
 
209 aa  157  9e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.118995  n/a   
 
 
-
 
NC_008025  Dgeo_2143  multiple antibiotic resistance (MarC)-related proteins  44.72 
 
 
214 aa  155  5.0000000000000005e-37  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0955  multiple antibiotic resistance (MarC)-related proteins  48.56 
 
 
205 aa  154  8e-37  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2097  multiple antibiotic resistance (MarC)-related protein  47.74 
 
 
206 aa  153  2e-36  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2843  multiple antibiotic resistance (MarC)-related protein  42.57 
 
 
212 aa  152  5e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1399  multiple antibiotic resistance (MarC)-related proteins  44.9 
 
 
217 aa  145  3e-34  Chelativorans sp. BNC1  Bacteria  normal  0.557326  n/a   
 
 
-
 
NC_007406  Nwi_1802  multiple antibiotic resistance (MarC)-related proteins  42.86 
 
 
207 aa  142  3e-33  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0240208  normal  0.177395 
 
 
-
 
NC_007498  Pcar_0161  hypothetical protein  41.21 
 
 
210 aa  141  7e-33  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2518  multiple antibiotic resistance (MarC)-related proteins  39.51 
 
 
211 aa  141  9e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.135192  n/a   
 
 
-
 
NC_014212  Mesil_1323  multiple antibiotic resistance (MarC)-related protein  43.07 
 
 
204 aa  140  9.999999999999999e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.199618 
 
 
-
 
NC_007964  Nham_1763  multiple antibiotic resistance (MarC)-related proteins  41.87 
 
 
207 aa  140  1.9999999999999998e-32  Nitrobacter hamburgensis X14  Bacteria  normal  0.619286  n/a   
 
 
-
 
NC_011901  Tgr7_0693  multiple antibiotic resistance (MarC)-related protein  42.56 
 
 
209 aa  140  1.9999999999999998e-32  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2756  multiple antibiotic resistance (MarC)-related protein  38.42 
 
 
206 aa  139  3.9999999999999997e-32  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009975  MmarC6_0686  multiple antibiotic resistance (MarC)-related protein  35.68 
 
 
213 aa  137  1e-31  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1406  multiple antibiotic resistance (MarC)-related protein  35.68 
 
 
213 aa  135  3.0000000000000003e-31  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1270  multiple antibiotic resistance (MarC)-related protein  34.74 
 
 
213 aa  135  4e-31  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009483  Gura_0644  multiple antibiotic resistance (MarC)-related protein  39.6 
 
 
210 aa  134  9.999999999999999e-31  Geobacter uraniireducens Rf4  Bacteria  normal  0.0517184  n/a   
 
 
-
 
NC_007794  Saro_0268  multiple antibiotic resistance (MarC)-related proteins  47.74 
 
 
206 aa  132  3.9999999999999996e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1391  multiple antibiotic resistance (MarC)-related proteins  34.31 
 
 
198 aa  130  1.0000000000000001e-29  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0374  multiple antibiotic resistance (MarC)-related proteins  40.39 
 
 
214 aa  129  3e-29  Maricaulis maris MCS10  Bacteria  normal  normal  0.774303 
 
 
-
 
NC_010508  Bcenmc03_0407  multiple antibiotic resistance (MarC)-related protein  36.14 
 
 
206 aa  128  5.0000000000000004e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.190902 
 
 
-
 
NC_009634  Mevan_1278  multiple antibiotic resistance (MarC)-related protein  32.7 
 
 
212 aa  128  6e-29  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_003295  RSc2949  hypothetical protein  36.82 
 
 
207 aa  128  7.000000000000001e-29  Ralstonia solanacearum GMI1000  Bacteria  normal  0.514078  normal 
 
 
-
 
NC_010682  Rpic_3226  multiple antibiotic resistance (MarC)-related protein  36.18 
 
 
207 aa  127  9.000000000000001e-29  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0772  multiple antibiotic resistance (MarC)-related protein  37.44 
 
 
211 aa  127  1.0000000000000001e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1719  multiple antibiotic resistance (MarC)-related protein  43.59 
 
 
212 aa  127  1.0000000000000001e-28  Acidiphilium cryptum JF-5  Bacteria  normal  0.111498  n/a   
 
 
-
 
NC_012912  Dd1591_2196  hypothetical protein  33.82 
 
 
214 aa  127  1.0000000000000001e-28  Dickeya zeae Ech1591  Bacteria  normal  0.522591  n/a   
 
 
-
 
NC_008060  Bcen_2679  multiple antibiotic resistance (MarC)-related proteins  35.64 
 
 
206 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.356849  n/a   
 
 
-
 
NC_008542  Bcen2424_0428  multiple antibiotic resistance (MarC)-related proteins  35.64 
 
 
206 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2825  integral membrane protein, MarC family  35.41 
 
 
207 aa  125  3e-28  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2079  multiple antibiotic resistance (MarC)-related protein  41.38 
 
 
209 aa  126  3e-28  Thioalkalivibrio sp. K90mix  Bacteria  hitchhiker  0.00616176  normal 
 
 
-
 
NC_007951  Bxe_A0401  MarC family multiple antibiotic resistance protein  33.66 
 
 
206 aa  125  4.0000000000000003e-28  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0355  multiple antibiotic resistance (MarC)-related protein  35.68 
 
 
206 aa  125  5e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.458882 
 
 
-
 
NC_007510  Bcep18194_A3526  multiple antibiotic resistance (MarC)-related proteins  35.15 
 
 
206 aa  125  5e-28  Burkholderia sp. 383  Bacteria  normal  0.303666  normal  0.286765 
 
 
-
 
NC_008390  Bamb_0346  multiple antibiotic resistance (MarC)-related proteins  35.68 
 
 
206 aa  125  5e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.383588  n/a   
 
 
-
 
NC_009783  VIBHAR_00158  multiple antibiotic transporter  35.47 
 
 
208 aa  125  6e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010681  Bphyt_3557  multiple antibiotic resistance (MarC)-related protein  33.17 
 
 
206 aa  124  7e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  0.247513  hitchhiker  0.0000492857 
 
 
-
 
NC_011662  Tmz1t_0417  multiple antibiotic resistance (MarC)-related protein  36.68 
 
 
202 aa  124  8.000000000000001e-28  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1694  hypothetical protein  35.64 
 
 
210 aa  124  9e-28  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0657108 
 
 
-
 
NC_012856  Rpic12D_2879  multiple antibiotic resistance (MarC)-related protein  36.18 
 
 
207 aa  123  2e-27  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0513768 
 
 
-
 
NC_008553  Mthe_1410  multiple antibiotic resistance (MarC)-related proteins  39.29 
 
 
231 aa  123  2e-27  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_012918  GM21_0451  multiple antibiotic resistance (MarC)-related protein  35.64 
 
 
219 aa  123  2e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011761  AFE_0054  integral membrane protein, MarC family  38.31 
 
 
216 aa  122  3e-27  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.207585  n/a   
 
 
-
 
NC_013889  TK90_0587  multiple antibiotic resistance (MarC)-related protein  35.55 
 
 
235 aa  122  3e-27  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0123495 
 
 
-
 
NC_011206  Lferr_0055  multiple antibiotic resistance (MarC)-related protein  38.31 
 
 
218 aa  122  4e-27  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0468967  normal  0.907646 
 
 
-
 
NC_006348  BMA2711  MarC membrane protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2762  MarC membrane protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3242  MarC membrane protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3690  hypothetical protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  0.984937  n/a   
 
 
-
 
NC_009076  BURPS1106A_3721  MarC membrane protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  0.596949  n/a   
 
 
-
 
NC_007651  BTH_I2990  hypothetical protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia thailandensis E264  Bacteria  normal  0.792349  n/a   
 
 
-
 
NC_008752  Aave_0319  multiple antibiotic resistance (MarC)-related protein  34.63 
 
 
211 aa  122  5e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3663  MarC membrane protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1791  MarC membrane protein  34.67 
 
 
206 aa  122  5e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2045  hypothetical protein  34.47 
 
 
207 aa  121  6e-27  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00255531  n/a   
 
 
-
 
NC_011146  Gbem_0428  multiple antibiotic resistance (MarC)-related protein  35.18 
 
 
219 aa  120  9.999999999999999e-27  Geobacter bemidjiensis Bem  Bacteria  normal  0.157732  n/a   
 
 
-
 
NC_010084  Bmul_0331  multiple antibiotic resistance (MarC)-related protein  36 
 
 
206 aa  120  9.999999999999999e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2011  multiple antibiotic resistance (MarC)-related protein  34.3 
 
 
226 aa  119  1.9999999999999998e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011145  AnaeK_1832  multiple antibiotic resistance (MarC)-related protein  36.08 
 
 
211 aa  119  3e-26  Anaeromyxobacter sp. K  Bacteria  normal  0.475063  n/a   
 
 
-
 
NC_013161  Cyan8802_2036  multiple antibiotic resistance (MarC)-related protein  34.3 
 
 
226 aa  119  3e-26  Cyanothece sp. PCC 8802  Bacteria  normal  0.0819991  normal 
 
 
-
 
NC_008709  Ping_1553  multiple antibiotic resistance (MarC)-related proteins  41.63 
 
 
210 aa  119  3e-26  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.460198 
 
 
-
 
NC_013926  Aboo_0644  multiple antibiotic resistance (MarC)-related protein  33.99 
 
 
204 aa  118  4.9999999999999996e-26  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_011832  Mpal_1556  multiple antibiotic resistance (MarC)-related protein  35.29 
 
 
216 aa  119  4.9999999999999996e-26  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_011901  Tgr7_2476  multiple antibiotic resistance (MarC)-related protein  35.82 
 
 
242 aa  118  7e-26  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2046  multiple antibiotic resistance (MarC)-related proteins  35.78 
 
 
211 aa  118  7e-26  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_0570  multiple antibiotic resistance (MarC)-related protein  35.58 
 
 
217 aa  118  7e-26  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2303  hypothetical protein  37.19 
 
 
215 aa  118  7.999999999999999e-26  Enterobacter sp. 638  Bacteria  normal  0.45168  normal 
 
 
-
 
NC_008782  Ajs_0258  multiple antibiotic resistance (MarC)-related proteins  33.98 
 
 
212 aa  117  9e-26  Acidovorax sp. JS42  Bacteria  normal  normal  0.0133581 
 
 
-
 
NC_008228  Patl_3498  multiple antibiotic resistance (MarC)-related proteins  35.35 
 
 
202 aa  117  9e-26  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.000000046015  n/a   
 
 
-
 
NC_011891  A2cp1_1917  multiple antibiotic resistance (MarC)-related protein  34.03 
 
 
211 aa  117  9e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0692726  n/a   
 
 
-
 
NC_011992  Dtpsy_0253  multiple antibiotic resistance (MarC)-related protein  33.98 
 
 
212 aa  117  9e-26  Acidovorax ebreus TPSY  Bacteria  normal  0.592133  n/a   
 
 
-
 
NC_012669  Bcav_2908  multiple antibiotic resistance (MarC)-related protein protein  38.83 
 
 
206 aa  117  9.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.275757  normal  0.0232741 
 
 
-
 
NC_007954  Sden_1910  hypothetical protein  34.72 
 
 
207 aa  117  9.999999999999999e-26  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.000000443138  n/a   
 
 
-
 
NC_010465  YPK_2071  hypothetical protein  31.86 
 
 
214 aa  116  3e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0381177  n/a   
 
 
-
 
NC_009708  YpsIP31758_1962  hypothetical protein  31.86 
 
 
214 aa  116  3e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0187  multiple antibiotic resistance (MarC)-related protein  35.18 
 
 
213 aa  115  5e-25  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009832  Spro_2703  hypothetical protein  33.33 
 
 
214 aa  115  6e-25  Serratia proteamaculans 568  Bacteria  hitchhiker  0.000872945  hitchhiker  0.000692167 
 
 
-
 
NC_010159  YpAngola_A2164  hypothetical protein  32.2 
 
 
214 aa  115  6e-25  Yersinia pestis Angola  Bacteria  normal  0.033055  normal  0.026113 
 
 
-
 
NC_004347  SO_2137  hypothetical protein  32.18 
 
 
210 aa  115  6.9999999999999995e-25  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011205  SeD_A1580  hypothetical protein  34.02 
 
 
215 aa  114  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.439502  normal 
 
 
-
 
NC_011149  SeAg_B1397  hypothetical protein  34.02 
 
 
215 aa  114  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.126468  n/a   
 
 
-
 
NC_011080  SNSL254_A1875  hypothetical protein  34.02 
 
 
215 aa  114  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.67019  normal 
 
 
-
 
NC_011083  SeHA_C1938  hypothetical protein  34.02 
 
 
215 aa  114  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.476555 
 
 
-
 
NC_011094  SeSA_A1881  hypothetical protein  34.02 
 
 
215 aa  114  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.66407 
 
 
-
 
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