More than 300 homologs were found in PanDaTox collection
for query gene Pden_0906 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_0906  multiple antibiotic resistance (MarC)-related proteins  100 
 
 
203 aa  385  1e-106  Paracoccus denitrificans PD1222  Bacteria  normal  0.201578  normal  0.0510602 
 
 
-
 
NC_007493  RSP_2896  multidrug ABC transporter  66.18 
 
 
206 aa  248  4e-65  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1540  multiple antibiotic resistance (MarC)-related proteins  66.18 
 
 
206 aa  248  4e-65  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.29956  normal 
 
 
-
 
NC_007802  Jann_1818  multiple antibiotic resistance (MarC)-related proteins  64 
 
 
205 aa  245  4e-64  Jannaschia sp. CCS1  Bacteria  normal  normal  0.397202 
 
 
-
 
NC_009428  Rsph17025_1125  multiple antibiotic resistance (MarC)-related protein  64.88 
 
 
207 aa  243  9.999999999999999e-64  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0974003 
 
 
-
 
NC_009952  Dshi_1348  multiple antibiotic resistance (MarC)-related protein  62.38 
 
 
208 aa  217  8.999999999999998e-56  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.160191 
 
 
-
 
NC_008044  TM1040_0953  multiple antibiotic resistance (MarC)-related proteins  52.76 
 
 
207 aa  201  5e-51  Ruegeria sp. TM1040  Bacteria  normal  0.838216  normal 
 
 
-
 
NC_011989  Avi_2385  hypothetical protein  44.61 
 
 
209 aa  165  4e-40  Agrobacterium vitis S4  Bacteria  normal  0.0520514  n/a   
 
 
-
 
NC_008048  Sala_3099  multiple antibiotic resistance (MarC)-related proteins  49.26 
 
 
209 aa  162  4.0000000000000004e-39  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.554479  normal 
 
 
-
 
NC_004310  BR1098  hypothetical protein  45.96 
 
 
209 aa  159  4e-38  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1929  multiple antibiotic resistance (MarC)-related protein  45.27 
 
 
215 aa  158  5e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.604403  normal 
 
 
-
 
NC_009505  BOV_1059  hypothetical protein  45.96 
 
 
209 aa  156  2e-37  Brucella ovis ATCC 25840  Bacteria  normal  0.728304  n/a   
 
 
-
 
NC_011369  Rleg2_1743  multiple antibiotic resistance (MarC)-related protein  44.28 
 
 
215 aa  155  5.0000000000000005e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.565671  normal  0.375082 
 
 
-
 
NC_010581  Bind_1880  multiple antibiotic resistance (MarC)-related protein  44.88 
 
 
209 aa  153  2e-36  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2873  multiple antibiotic resistance (MarC)-related protein  50 
 
 
213 aa  152  2.9999999999999998e-36  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0453774 
 
 
-
 
NC_009667  Oant_2183  multiple antibiotic resistance (MarC)-related protein  45.96 
 
 
209 aa  152  2.9999999999999998e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.118995  n/a   
 
 
-
 
NC_008025  Dgeo_2143  multiple antibiotic resistance (MarC)-related proteins  46.04 
 
 
214 aa  149  4e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1240  multiple antibiotic resistance (MarC)-related protein  41.67 
 
 
209 aa  147  1.0000000000000001e-34  Sinorhizobium medicae WSM419  Bacteria  normal  0.185324  normal  0.313526 
 
 
-
 
NC_007406  Nwi_1802  multiple antibiotic resistance (MarC)-related proteins  44.16 
 
 
207 aa  146  2.0000000000000003e-34  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0240208  normal  0.177395 
 
 
-
 
NC_008254  Meso_1399  multiple antibiotic resistance (MarC)-related proteins  45.96 
 
 
217 aa  146  2.0000000000000003e-34  Chelativorans sp. BNC1  Bacteria  normal  0.557326  n/a   
 
 
-
 
NC_007964  Nham_1763  multiple antibiotic resistance (MarC)-related proteins  43.35 
 
 
207 aa  145  3e-34  Nitrobacter hamburgensis X14  Bacteria  normal  0.619286  n/a   
 
 
-
 
NC_013526  Tter_2843  multiple antibiotic resistance (MarC)-related protein  42.42 
 
 
212 aa  144  7.0000000000000006e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0955  multiple antibiotic resistance (MarC)-related proteins  46.97 
 
 
205 aa  141  6e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3498  multiple antibiotic resistance (MarC)-related proteins  38.58 
 
 
202 aa  137  2e-31  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.000000046015  n/a   
 
 
-
 
NC_008709  Ping_1391  multiple antibiotic resistance (MarC)-related proteins  35.15 
 
 
198 aa  135  3.0000000000000003e-31  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0644  multiple antibiotic resistance (MarC)-related protein  40.8 
 
 
210 aa  134  6.0000000000000005e-31  Geobacter uraniireducens Rf4  Bacteria  normal  0.0517184  n/a   
 
 
-
 
NC_013946  Mrub_2097  multiple antibiotic resistance (MarC)-related protein  44.95 
 
 
206 aa  134  9.999999999999999e-31  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0374  multiple antibiotic resistance (MarC)-related proteins  41.55 
 
 
214 aa  133  1.9999999999999998e-30  Maricaulis maris MCS10  Bacteria  normal  normal  0.774303 
 
 
-
 
NC_011901  Tgr7_0693  multiple antibiotic resistance (MarC)-related protein  42.64 
 
 
209 aa  132  3.9999999999999996e-30  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2079  multiple antibiotic resistance (MarC)-related protein  42.79 
 
 
209 aa  131  5e-30  Thioalkalivibrio sp. K90mix  Bacteria  hitchhiker  0.00616176  normal 
 
 
-
 
NC_010682  Rpic_3226  multiple antibiotic resistance (MarC)-related protein  36.41 
 
 
207 aa  128  5.0000000000000004e-29  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2518  multiple antibiotic resistance (MarC)-related proteins  39.71 
 
 
211 aa  126  2.0000000000000002e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.135192  n/a   
 
 
-
 
NC_007794  Saro_0268  multiple antibiotic resistance (MarC)-related proteins  42.5 
 
 
206 aa  127  2.0000000000000002e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1323  multiple antibiotic resistance (MarC)-related protein  40.3 
 
 
204 aa  125  6e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.199618 
 
 
-
 
NC_011146  Gbem_0428  multiple antibiotic resistance (MarC)-related protein  36 
 
 
219 aa  124  9e-28  Geobacter bemidjiensis Bem  Bacteria  normal  0.157732  n/a   
 
 
-
 
NC_008553  Mthe_1410  multiple antibiotic resistance (MarC)-related proteins  35.6 
 
 
231 aa  123  2e-27  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_014230  CA2559_08146  multiple antibiotic resistance protein MarC  32.99 
 
 
204 aa  121  6e-27  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0451  multiple antibiotic resistance (MarC)-related protein  36 
 
 
219 aa  120  9.999999999999999e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_003295  RSc2949  hypothetical protein  34.98 
 
 
207 aa  120  1.9999999999999998e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  0.514078  normal 
 
 
-
 
NC_009783  VIBHAR_00158  multiple antibiotic transporter  35.68 
 
 
208 aa  119  1.9999999999999998e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_0587  multiple antibiotic resistance (MarC)-related protein  33.82 
 
 
235 aa  119  3e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0123495 
 
 
-
 
NC_013521  Sked_27780  conserved hypothetical protein TIGR00427  37.11 
 
 
203 aa  118  6e-26  Sanguibacter keddieii DSM 10542  Bacteria  decreased coverage  0.004251  normal  0.739929 
 
 
-
 
NC_007912  Sde_3071  MCP methyltransferase, CheR-type  37.11 
 
 
207 aa  118  6e-26  Saccharophagus degradans 2-40  Bacteria  normal  0.574672  normal  0.0243793 
 
 
-
 
NC_009484  Acry_1719  multiple antibiotic resistance (MarC)-related protein  40.89 
 
 
212 aa  118  6e-26  Acidiphilium cryptum JF-5  Bacteria  normal  0.111498  n/a   
 
 
-
 
NC_009665  Shew185_1949  hypothetical protein  35.78 
 
 
210 aa  117  9.999999999999999e-26  Shewanella baltica OS185  Bacteria  normal  0.0303133  n/a   
 
 
-
 
NC_009997  Sbal195_1956  hypothetical protein  35.78 
 
 
210 aa  117  9.999999999999999e-26  Shewanella baltica OS195  Bacteria  normal  normal  0.466227 
 
 
-
 
NC_011663  Sbal223_2370  hypothetical protein  35.78 
 
 
210 aa  117  9.999999999999999e-26  Shewanella baltica OS223  Bacteria  normal  0.0117247  normal  0.036415 
 
 
-
 
NC_009052  Sbal_1923  hypothetical protein  35.78 
 
 
210 aa  117  9.999999999999999e-26  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1684  hypothetical protein  35.41 
 
 
210 aa  117  9.999999999999999e-26  Shewanella sp. MR-4  Bacteria  normal  0.197685  normal  0.181239 
 
 
-
 
NC_008577  Shewana3_1789  hypothetical protein  35.41 
 
 
210 aa  117  9.999999999999999e-26  Shewanella sp. ANA-3  Bacteria  normal  0.153384  normal  0.0804929 
 
 
-
 
NC_009438  Sputcn32_1812  hypothetical protein  35.29 
 
 
210 aa  117  1.9999999999999998e-25  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1759  hypothetical protein  36.27 
 
 
210 aa  116  1.9999999999999998e-25  Shewanella sp. MR-7  Bacteria  normal  0.0131249  normal  0.465228 
 
 
-
 
NC_004347  SO_2137  hypothetical protein  34.8 
 
 
210 aa  115  3e-25  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007498  Pcar_0161  hypothetical protein  37.56 
 
 
210 aa  115  3e-25  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2879  multiple antibiotic resistance (MarC)-related protein  35.47 
 
 
207 aa  116  3e-25  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0513768 
 
 
-
 
NC_011901  Tgr7_2476  multiple antibiotic resistance (MarC)-related protein  36.59 
 
 
242 aa  115  3e-25  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2679  multiple antibiotic resistance (MarC)-related proteins  34.98 
 
 
206 aa  115  3.9999999999999997e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.356849  n/a   
 
 
-
 
NC_008542  Bcen2424_0428  multiple antibiotic resistance (MarC)-related proteins  34.98 
 
 
206 aa  115  3.9999999999999997e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0772  multiple antibiotic resistance (MarC)-related protein  34.85 
 
 
211 aa  115  3.9999999999999997e-25  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1694  hypothetical protein  38.28 
 
 
210 aa  115  3.9999999999999997e-25  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0657108 
 
 
-
 
NC_010508  Bcenmc03_0407  multiple antibiotic resistance (MarC)-related protein  34.48 
 
 
206 aa  115  6e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.190902 
 
 
-
 
NC_011126  HY04AAS1_0570  multiple antibiotic resistance (MarC)-related protein  32.66 
 
 
217 aa  114  6.9999999999999995e-25  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0417  multiple antibiotic resistance (MarC)-related protein  36.95 
 
 
202 aa  114  7.999999999999999e-25  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1910  hypothetical protein  37.19 
 
 
207 aa  114  8.999999999999998e-25  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.000000443138  n/a   
 
 
-
 
NC_011312  VSAL_I2825  integral membrane protein, MarC family  31.53 
 
 
207 aa  113  1.0000000000000001e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A3108  multiple antibiotic resistance (MarC)-related proteins  32.49 
 
 
207 aa  114  1.0000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2242  hypothetical protein  37.32 
 
 
212 aa  114  1.0000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  0.177472  normal  0.0116098 
 
 
-
 
NC_009831  Ssed_4435  multiple antibiotic resistance (MarC)-related protein  37.82 
 
 
201 aa  113  2.0000000000000002e-24  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0000587545  normal 
 
 
-
 
NC_010681  Bphyt_3557  multiple antibiotic resistance (MarC)-related protein  35.44 
 
 
206 aa  113  2.0000000000000002e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  0.247513  hitchhiker  0.0000492857 
 
 
-
 
NC_008390  Bamb_0346  multiple antibiotic resistance (MarC)-related proteins  34.5 
 
 
206 aa  113  2.0000000000000002e-24  Burkholderia ambifaria AMMD  Bacteria  normal  0.383588  n/a   
 
 
-
 
NC_010551  BamMC406_0355  multiple antibiotic resistance (MarC)-related protein  34.5 
 
 
206 aa  113  2.0000000000000002e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.458882 
 
 
-
 
NC_011832  Mpal_1556  multiple antibiotic resistance (MarC)-related protein  35.5 
 
 
216 aa  112  4.0000000000000004e-24  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3526  multiple antibiotic resistance (MarC)-related proteins  34 
 
 
206 aa  112  4.0000000000000004e-24  Burkholderia sp. 383  Bacteria  normal  0.303666  normal  0.286765 
 
 
-
 
NC_008752  Aave_0319  multiple antibiotic resistance (MarC)-related protein  34.17 
 
 
211 aa  112  4.0000000000000004e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0644  multiple antibiotic resistance (MarC)-related protein  33.5 
 
 
204 aa  112  4.0000000000000004e-24  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0847  multiple antibiotic resistance (MarC)-related protein  35.38 
 
 
196 aa  112  5e-24  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.0972669 
 
 
-
 
NC_009783  VIBHAR_03019  hypothetical protein  33.99 
 
 
212 aa  111  6e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011206  Lferr_0055  multiple antibiotic resistance (MarC)-related protein  36.1 
 
 
218 aa  111  6e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0468967  normal  0.907646 
 
 
-
 
NC_010581  Bind_3347  multiple drug resistance protein MarC  36.73 
 
 
217 aa  111  6e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.123982 
 
 
-
 
NC_011761  AFE_0054  integral membrane protein, MarC family  36.1 
 
 
216 aa  111  7.000000000000001e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.207585  n/a   
 
 
-
 
NC_008309  HS_1233  hypothetical protein  31.58 
 
 
208 aa  111  7.000000000000001e-24  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2348  hypothetical protein  37.02 
 
 
210 aa  111  9e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0647314  hitchhiker  0.000000838099 
 
 
-
 
NC_009076  BURPS1106A_3721  MarC membrane protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  0.596949  n/a   
 
 
-
 
NC_006348  BMA2711  MarC membrane protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3663  MarC membrane protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3690  hypothetical protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  0.984937  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3242  MarC membrane protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2762  MarC membrane protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2990  hypothetical protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia thailandensis E264  Bacteria  normal  0.792349  n/a   
 
 
-
 
NC_007951  Bxe_A0401  MarC family multiple antibiotic resistance protein  35.44 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0331  multiple antibiotic resistance (MarC)-related protein  35.15 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A1791  MarC membrane protein  34.31 
 
 
206 aa  110  1.0000000000000001e-23  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0092  multiple antibiotic resistance (MarC)-related proteins  34.87 
 
 
197 aa  110  2.0000000000000002e-23  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1366  multiple antibiotic resistance (MarC)-related proteins  42.72 
 
 
209 aa  110  2.0000000000000002e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0943979  normal 
 
 
-
 
NC_010506  Swoo_4828  multiple antibiotic resistance (MarC)-related protein  36.84 
 
 
200 aa  109  3e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2045  hypothetical protein  36.89 
 
 
207 aa  109  3e-23  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00255531  n/a   
 
 
-
 
NC_007955  Mbur_0272  multiple antibiotic resistance (MarC)-related proteins  30.69 
 
 
214 aa  109  3e-23  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_008709  Ping_1553  multiple antibiotic resistance (MarC)-related proteins  41.09 
 
 
210 aa  109  3e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.460198 
 
 
-
 
NC_009901  Spea_4152  multiple antibiotic resistance (MarC)-related protein  35.94 
 
 
198 aa  108  4.0000000000000004e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0238  multiple antibiotic resistance (MarC)-related proteins  36 
 
 
210 aa  108  4.0000000000000004e-23  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
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