| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2949 |
|---|
| Symbol | |
|---|
| ID | 1221803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3178059 |
|---|
| End bp | 3178682 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637239357 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_521070 |
|---|
| Protein GI | 17547668 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2095] Multiple antibiotic transporter |
|---|
| TIGRFAM ID | [TIGR00427] membrane protein, MarC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.514078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGA CCAAGAGCTT CTTTTCGCTG CTGGCACTGA TCAACCCGAT CGGGGCGATC
CCGTTCTTCA TCAGTTTGAC CGAGAGCCAG ACGGATGAGG AAAAGCGGCG CACGATCAAG
ACCGCGTCGG TTTCGGTGGC GCTGGTGATC GGCATCAGCG CGCTGCTGGG CGAGCAGATC
ATCGGTTTCT TCGGTTTTTC GGTCGGCTCG CTGCAGGTGG GCGGCGGGAT CATCATGATC
ATGATCGCGC TGAACATGCT GAACGCGCAG ACCAGCCGCA CCAAGGCCAC GCCGGAGGAA
GAGGACGAGG CCGGCGTGCG GGCCAGCATC GCGGTGGTGC CGCTGGCGAT CCCCTTGCTG
ACGGGCCCGG GCTCGATCAG CACGGTGATC GTCTACGCGG GCAAGACTCA GCACTGGTAC
GAGCTGCTCT TCCTGGCCGG CGTGGGCGTG CTGATCGCGC TGGTGGTGTG GATCGTGCTG
CGCGCAGCCG AGCCGATCGC CCGCGTGATC GGCCGCACCG GTATCAACGT CGGCACGCGC
CTGATGGGGT TGATCCTCGC GGCGCTGGCC GTGGAATTCA TCGTCGACGG GCTGAAAACC
CTGTTGCCTG TTCTCAAATC ATGA
|
|---|
| Protein sequence | MDLTKSFFSL LALINPIGAI PFFISLTESQ TDEEKRRTIK TASVSVALVI GISALLGEQI
IGFFGFSVGS LQVGGGIIMI MIALNMLNAQ TSRTKATPEE EDEAGVRASI AVVPLAIPLL
TGPGSISTVI VYAGKTQHWY ELLFLAGVGV LIALVVWIVL RAAEPIARVI GRTGINVGTR
LMGLILAALA VEFIVDGLKT LLPVLKS
|
|---|
| |