38 homologs were found in PanDaTox collection
for query gene SO_2968 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_004347  SO_2968  phage terminase small subunit  100 
 
 		 170 aa  346  7e-95  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2597  phage terminase, small subunit, , P27 family  92.94 
 
 		 170 aa  327  3e-89  Shewanella baltica OS223  Bacteria  normal  0.115209  normal  0.0515475 
 
 
-
 
NC_012791  Vapar_2470  phage terminase, small subunit, , P27 family  63.31 
 
 		 163 aa  204  6e-52  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_002947  PP_3882  phage terminase, small subunit, putative  59.28 
 
 		 155 aa  193  1e-48  Pseudomonas putida KT2440  Bacteria  normal  0.686092  hitchhiker  0.00346128 
 
 
-
 
NC_011094  SeSA_A4461  putative phage terminase, small subunit, P27 family  55.95 
 
 		 154 aa  179  2e-44  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  hitchhiker  0.00000187625 
 
 
-
 
NC_009012  Cthe_1723  P27 family phage terminase small subunit  36.02 
 
 		 160 aa  94  9e-19  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.000117045  n/a   
 
 
-
 
NC_010625  Bphy_7138  P27 family phage terminase small subunit  35.58 
 
 		 152 aa  92.4  2e-18  Burkholderia phymatum STM815  Bacteria  normal  1  hitchhiker  0.00058611 
 
 
-
 
NC_010498  EcSMS35_1185  P27 family phage terminase small subunit  33.13 
 
 		 160 aa  89.7  2e-17  Escherichia coli SMS-3-5  Bacteria  normal  0.133965  hitchhiker  0.000000000518622 
 
 
-
 
NC_010508  Bcenmc03_1288  P27 family phage terminase small subunit  30.23 
 
 		 132 aa  79  0.00000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.163062  normal  1 
 
 
-
 
NC_009049  Rsph17029_0646  P27 family phage terminase small subunit  32.93 
 
 		 161 aa  79  0.00000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.646797  normal  1 
 
 
-
 
NC_008751  Dvul_0871  P27 family phage terminase small subunit  29.17 
 
 		 152 aa  77  0.0000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.831198  normal  1 
 
 
-
 
NC_008686  Pden_2064  P27 family phage terminase small subunit  29.52 
 
 		 156 aa  70.1  0.00000000001  Paracoccus denitrificans PD1222  Bacteria  normal  1  hitchhiker  0.00145671 
 
 
-
 
NC_007964  Nham_2021  phage terminase, small subunit, putative, P27  30.77 
 
 		 137 aa  68.6  0.00000000004  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_0334  phage terminase, small subunit, putative, P27  30.77 
 
 		 137 aa  68.2  0.00000000005  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_011769  DvMF_1659  putative phage terminase, small subunit, P27 family  29.94 
 
 		 157 aa  65.5  0.0000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_010623  Bphy_3398  P27 family phage terminase small subunit  39.02 
 
 		 158 aa  63.5  0.000000001  Burkholderia phymatum STM815  Bacteria  normal  0.096573  hitchhiker  0.0000000756325 
 
 
-
 
NC_007434  BURPS1710b_1678  P27 family phage terminase small subunit  28.95 
 
 		 161 aa  61.6  0.000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  0.253906  n/a   
 
 
-
 
NC_009513  Lreu_1120  P27 family phage terminase small subunit  28.57 
 
 		 157 aa  60.1  0.00000001  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_7333  phage terminase, small subunit, , P27 family  31.41 
 
 		 152 aa  59.7  0.00000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.367321  n/a   
 
 
-
 
NC_013093  Amir_3265  phage terminase, small subunit, P27 family  30.63 
 
 		 153 aa  58.9  0.00000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.757677  n/a   
 
 
-
 
NC_009049  Rsph17029_0286  P27 family phage terminase small subunit  30.58 
 
 		 144 aa  58.5  0.00000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_1724  phage terminase, small subunit, putative, P27  27.69 
 
 		 138 aa  57  0.0000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.0277511  n/a   
 
 
-
 
NC_008531  LEUM_1650  Phage terminase, small subunit  28.57 
 
 		 187 aa  55.8  0.0000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A2620  phage terminase, small subunit, putative, P27 family  26.22 
 
 		 167 aa  54.3  0.0000007  Bacillus cereus B4264  Bacteria  normal  0.0118703  n/a   
 
 
-
 
NC_011094  SeSA_A2268  putative phage terminase, small subunit, P27 family  29.94 
 
 		 164 aa  54.3  0.0000008  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.753219  normal  0.08804 
 
 
-
 
NC_009428  Rsph17025_1369  P27 family phage terminase small subunit  28.79 
 
 		 143 aa  53.5  0.000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.369715 
 
 
-
 
NC_013411  GYMC61_0622  phage terminase, small subunit, , P27 family  27.62 
 
 		 165 aa  53.1  0.000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011205  SeD_A2272  putative phage terminase, small subunit, P27 family  29.94 
 
 		 164 aa  53.1  0.000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0621935  hitchhiker  0.0000000000000114171 
 
 
-
 
NC_007406  Nwi_1473  phage terminase, small subunit, putative, P27  29.91 
 
 		 131 aa  52  0.000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.889427  normal  0.331074 
 
 
-
 
NC_007406  Nwi_1617  phage terminase, small subunit, putative, P27  29.91 
 
 		 131 aa  51.6  0.000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.207143  normal  0.415042 
 
 
-
 
NC_010831  Cphamn1_0220  phage terminase, small subunit, , P27 family  28.57 
 
 		 166 aa  50.1  0.00002  Chlorobium phaeobacteroides BS1  Bacteria  unclonable  0.0000000228338  unclonable  0.00000741257 
 
 
-
 
NC_014149  Plim_4249  phage terminase, small subunit, , P27 family  26.89 
 
 		 160 aa  48.9  0.00003  Planctomyces limnophilus DSM 3776  Bacteria  normal  1  n/a   
 
 
-
 
NC_007493  RSP_2353  hypothetical protein  30.52 
 
 		 131 aa  46.2  0.0002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_2481  phage terminase, small subunit, putative, P27  22.7 
 
 		 130 aa  43.9  0.001  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_008060  Bcen_0839  phage terminase, small subunit, putative, P27  28.81 
 
 		 154 aa  43.5  0.001  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.00189834  n/a   
 
 
-
 
NC_008542  Bcen2424_1320  P27 family phage terminase small subunit  28.81 
 
 		 154 aa  43.5  0.001  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000502965  n/a   
 
 
-
 
NC_011989  Avi_1966  Phage terminase protein  27.68 
 
 		 155 aa  43.1  0.002  Agrobacterium vitis S4  Bacteria  normal  0.358239  n/a   
 
 
-
 
NC_011830  Dhaf_1454  phage terminase, small subunit, , P27 family  24.44 
 
 		 165 aa  41.6  0.006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>