More than 300 homologs were found in PanDaTox collection
for query gene Gbem_3098 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012918  GM21_1164  DNA internalization-related competence protein ComEC/Rec2  92.41 
 
 
777 aa  1248    Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00428726 
 
 
-
 
NC_009483  Gura_1885  DNA internalization-related competence protein ComEC/Rec2  49.24 
 
 
797 aa  687    Geobacter uraniireducens Rf4  Bacteria  normal  0.372915  n/a   
 
 
-
 
NC_011146  Gbem_3098  DNA internalization-related competence protein ComEC/Rec2  100 
 
 
811 aa  1589    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1657  DNA internalization-related competence protein ComEC/Rec2  46.69 
 
 
771 aa  612  9.999999999999999e-175  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1915  DNA internalization-related competence protein ComEC/Rec2  45.43 
 
 
798 aa  615  9.999999999999999e-175  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00143186 
 
 
-
 
NC_008609  Ppro_1379  DNA internalization-related competence protein ComEC/Rec2  40.77 
 
 
808 aa  489  1e-137  Pelobacter propionicus DSM 2379  Bacteria  normal  0.011467  n/a   
 
 
-
 
NC_010814  Glov_1759  DNA internalization-related competence protein ComEC/Rec2  38.85 
 
 
814 aa  445  1e-123  Geobacter lovleyi SZ  Bacteria  normal  0.0611654  n/a   
 
 
-
 
NC_009943  Dole_0767  DNA internalization-related competence protein ComEC/Rec2  31.78 
 
 
840 aa  293  1e-77  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2510  DNA internalization-related competence protein ComEC/Rec2  30.81 
 
 
794 aa  282  1e-74  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1716  DNA internalization-related competence protein ComEC/Rec2  31.97 
 
 
846 aa  268  4e-70  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.116279  normal  0.782454 
 
 
-
 
NC_007498  Pcar_1043  DNA internalization-related competence protein ComEC/Rec2  31.66 
 
 
785 aa  243  7.999999999999999e-63  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2070  DNA internalization-related competence protein ComEC/Rec2  31.17 
 
 
818 aa  237  8e-61  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_12920  DNA internalization-related competence protein ComEC/Rec2  27.18 
 
 
775 aa  231  6e-59  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000012809  n/a   
 
 
-
 
NC_013216  Dtox_3303  DNA internalization-related competence protein ComEC/Rec2  29.1 
 
 
789 aa  230  7e-59  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.78547  normal 
 
 
-
 
NC_008346  Swol_1595  DNA internalization-related competence protein ComEC/Rec2  30.6 
 
 
761 aa  229  2e-58  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0606  DNA internalization-related competence protein ComEC/Rec2  26.79 
 
 
778 aa  223  1.9999999999999999e-56  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0600  DNA internalization-related competence protein ComEC/Rec2  30.29 
 
 
815 aa  216  9.999999999999999e-55  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.404851 
 
 
-
 
NC_013385  Adeg_1483  DNA internalization-related competence protein ComEC/Rec2  30.88 
 
 
791 aa  211  4e-53  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2092  DNA internalization-related competence protein ComEC/Rec2  26.94 
 
 
757 aa  210  1e-52  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000797686  n/a   
 
 
-
 
NC_011898  Ccel_1955  DNA internalization-related competence protein ComEC/Rec2  25.22 
 
 
786 aa  207  6e-52  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1921  DNA internalization-related competence protein ComEC/Rec2  26.34 
 
 
752 aa  201  3.9999999999999996e-50  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00848355  n/a   
 
 
-
 
NC_002936  DET0024  DNA internalization-related competence protein ComEC/Rec2  26.57 
 
 
795 aa  201  5e-50  Dehalococcoides ethenogenes 195  Bacteria  normal  0.0591884  n/a   
 
 
-
 
NC_013552  DhcVS_23  DNA internalization competence protein  26.33 
 
 
795 aa  201  7e-50  Dehalococcoides sp. VS  Bacteria  normal  0.0107142  n/a   
 
 
-
 
NC_009455  DehaBAV1_0023  DNA internalization-related competence protein ComEC/Rec2  25.75 
 
 
796 aa  197  9e-49  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2449  DNA internalization-related competence protein ComEC/Rec2  26.35 
 
 
759 aa  196  2e-48  Geobacillus sp. WCH70  Bacteria  normal  0.327807  n/a   
 
 
-
 
NC_007644  Moth_0575  DNA internalization-related competence protein ComEC/Rec2  30.03 
 
 
809 aa  185  4.0000000000000006e-45  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_1579  DNA internalization-related competence protein ComEC/Rec2  34.96 
 
 
883 aa  179  1e-43  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0482933  normal 
 
 
-
 
NC_009674  Bcer98_3051  DNA internalization-related competence protein ComEC/Rec2  25.64 
 
 
780 aa  179  2e-43  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.755952  n/a   
 
 
-
 
NC_007520  Tcr_0957  DNA internalization-related competence protein ComEC/Rec2  27.93 
 
 
841 aa  175  2.9999999999999996e-42  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1429  DNA internalization-related competence protein ComEC/Rec2  28.44 
 
 
840 aa  172  3e-41  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0140  DNA internalization-related competence protein ComEC/Rec2  27.23 
 
 
868 aa  172  3e-41  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  hitchhiker  0.0038467 
 
 
-
 
NC_007947  Mfla_2093  DNA internalization-related competence protein ComEC/Rec2  26.96 
 
 
802 aa  168  4e-40  Methylobacillus flagellatus KT  Bacteria  normal  0.35183  normal 
 
 
-
 
NC_002976  SERP1155  competence protein ComEC/Rec2, putative  25.48 
 
 
738 aa  167  5.9999999999999996e-40  Staphylococcus epidermidis RP62A  Bacteria  normal  0.889631  n/a   
 
 
-
 
NC_010718  Nther_1173  DNA internalization-related competence protein ComEC/Rec2  25.69 
 
 
750 aa  166  2.0000000000000002e-39  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00434485  hitchhiker  0.000212306 
 
 
-
 
NC_003909  BCE_4406  DNA internalization-related competence protein ComEC/Rec2  25.63 
 
 
773 aa  166  2.0000000000000002e-39  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2672  DNA internalization-related competence protein ComEC/Rec2  26.99 
 
 
784 aa  166  2.0000000000000002e-39  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4458  DNA internalization-related competence protein ComEC/Rec2  25.46 
 
 
773 aa  163  9e-39  Bacillus cereus AH187  Bacteria  hitchhiker  0.00283851  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4176  DNA internalization-related competence protein ComEC/Rec2  22.93 
 
 
773 aa  162  2e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1680  DNA internalization-related competence protein ComEC/Rec2  25.11 
 
 
726 aa  162  3e-38  Staphylococcus aureus subsp. aureus JH1  Bacteria  decreased coverage  0.00317004  n/a   
 
 
-
 
NC_009487  SaurJH9_1645  DNA internalization-related competence protein ComEC/Rec2  25.11 
 
 
726 aa  162  3e-38  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.550311  n/a   
 
 
-
 
NC_013440  Hoch_1902  DNA internalization-related competence protein ComEC/Rec2  30.4 
 
 
880 aa  160  1e-37  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK4071  DNA internalization-related competence protein  25.17 
 
 
773 aa  159  2e-37  Bacillus cereus E33L  Bacteria  normal  0.499181  n/a   
 
 
-
 
NC_007298  Daro_2832  ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2  26.9 
 
 
772 aa  159  2e-37  Dechloromonas aromatica RCB  Bacteria  normal  0.395271  normal 
 
 
-
 
NC_007614  Nmul_A2506  DNA internalization-related competence protein ComEC/Rec2  25.96 
 
 
766 aa  158  5.0000000000000005e-37  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4061  DNA internalization-related competence protein ComEC/Rec2  25 
 
 
773 aa  157  6e-37  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4347  DNA internalization-related competence protein ComEC/Rec2  25.04 
 
 
654 aa  157  6e-37  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000320337 
 
 
-
 
NC_013411  GYMC61_1002  DNA internalization-related competence protein ComEC/Rec2  28.38 
 
 
749 aa  157  7e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_1990  DNA internalization-related competence protein ComEC/Rec2  29.08 
 
 
835 aa  155  2e-36  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1254  Beta-lactamase-like  37.45 
 
 
348 aa  155  2e-36  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.104793  normal  0.017013 
 
 
-
 
NC_013173  Dbac_1806  DNA internalization-related competence protein ComEC/Rec2  27.96 
 
 
804 aa  156  2e-36  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0792  DNA internalization-related competence protein ComEC/Rec2  24.83 
 
 
773 aa  155  4e-36  Bacillus cereus G9842  Bacteria  normal  0.92497  hitchhiker  0.0000000434572 
 
 
-
 
NC_012856  Rpic12D_1059  DNA internalization-related competence protein ComEC/Rec2  26.65 
 
 
839 aa  153  1e-35  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS4223  DNA internalization-related competence protein ComEC/Rec2  25 
 
 
772 aa  152  2e-35  Bacillus anthracis str. Sterne  Bacteria  normal  0.396559  n/a   
 
 
-
 
NC_007530  GBAA_4551  DNA internalization-related competence protein ComEC/Rec2  25 
 
 
772 aa  152  2e-35  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.76471  n/a   
 
 
-
 
NC_011725  BCB4264_A4445  DNA internalization-related competence protein ComEC/Rec2  24.79 
 
 
773 aa  152  3e-35  Bacillus cereus B4264  Bacteria  normal  0.0495736  n/a   
 
 
-
 
NC_010513  Xfasm12_0386  DNA uptake protein  27.59 
 
 
825 aa  152  4e-35  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2627  DNA internalization-related competence protein ComEC/Rec2  27.16 
 
 
801 aa  150  1.0000000000000001e-34  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2072  beta-lactamase domain protein  32.3 
 
 
294 aa  150  1.0000000000000001e-34  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.438751  normal 
 
 
-
 
NC_010084  Bmul_1159  DNA internalization-related competence protein ComEC/Rec2  28.89 
 
 
819 aa  147  6e-34  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00785752 
 
 
-
 
NC_011901  Tgr7_1368  DNA internalization-related competence protein ComEC/Rec2  28.1 
 
 
770 aa  147  9e-34  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1759  DNA internalization-related competence protein ComEC/Rec2  27.88 
 
 
778 aa  147  1e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1120  putative transporter DNA uptake transmembrane protein  26.57 
 
 
847 aa  146  2e-33  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0978754  normal  0.511509 
 
 
-
 
NC_010577  XfasM23_0350  DNA internalization-related competence protein ComEC/Rec2  26.98 
 
 
822 aa  145  3e-33  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_2459  beta-lactamase domain protein  37.25 
 
 
479 aa  144  6e-33  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007347  Reut_A1079  ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2  27.77 
 
 
800 aa  143  9.999999999999999e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.723493  n/a   
 
 
-
 
NC_003910  CPS_2124  DNA internalization-related competence protein ComEC/Rec2  22.41 
 
 
860 aa  142  3e-32  Colwellia psychrerythraea 34H  Bacteria  normal  0.118158  n/a   
 
 
-
 
NC_007908  Rfer_2476  DNA internalization-related competence protein ComEC/Rec2  28.05 
 
 
766 aa  142  3e-32  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK2530  S-layer protein  31.85 
 
 
461 aa  139  3.0000000000000003e-31  Bacillus cereus E33L  Bacteria  decreased coverage  0.0000347347  n/a   
 
 
-
 
NC_011773  BCAH820_2811  putative S-layer protein  31.51 
 
 
461 aa  138  3.0000000000000003e-31  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000374812 
 
 
-
 
NC_011830  Dhaf_1135  beta-lactamase domain protein  32.81 
 
 
320 aa  139  3.0000000000000003e-31  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000000000516269  n/a   
 
 
-
 
NC_010717  PXO_00591  DNA internalization-related competence protein ComEC/Rec2  29.09 
 
 
776 aa  138  4e-31  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0903265  n/a   
 
 
-
 
NC_011899  Hore_14040  beta-lactamase domain protein  30.49 
 
 
406 aa  137  5e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2853  putative S-layer protein  31.54 
 
 
461 aa  138  5e-31  Bacillus cereus AH187  Bacteria  hitchhiker  0.000112389  n/a   
 
 
-
 
NC_010682  Rpic_0963  DNA internalization-related competence protein ComEC/Rec2  24.97 
 
 
840 aa  137  6.0000000000000005e-31  Ralstonia pickettii 12J  Bacteria  normal  0.116554  normal  0.0504124 
 
 
-
 
NC_008786  Veis_0403  DNA internalization-related competence protein ComEC/Rec2  28.81 
 
 
878 aa  137  9e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.105029 
 
 
-
 
NC_005945  BAS2613  S-layer protein  31.16 
 
 
461 aa  135  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  0.170996  n/a   
 
 
-
 
NC_007530  GBAA_2803  S-layer protein  31.16 
 
 
461 aa  135  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0432636  n/a   
 
 
-
 
NC_010501  PputW619_1508  DNA internalization-related competence protein ComEC/Rec2  27.34 
 
 
737 aa  136  1.9999999999999998e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_12600  DNA internalization-related competence protein ComEC/Rec2  27.73 
 
 
837 aa  135  3e-30  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3404  DNA internalization-related competence protein ComEC/Rec2  26.83 
 
 
747 aa  135  3e-30  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl0663  hypothetical protein  22.47 
 
 
735 aa  135  3.9999999999999996e-30  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007519  Dde_0547  ComEC/Rec2-related protein  27.95 
 
 
900 aa  135  3.9999999999999996e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1779  DNA internalization-related competence protein ComEC/Rec2  26 
 
 
762 aa  134  5e-30  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2554  putative transporter DNA uptake transmembrane protein  30.58 
 
 
846 aa  134  6e-30  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp0680  hypothetical protein  23.39 
 
 
735 aa  134  6e-30  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_0031  DNA internalization-related competence protein ComEC/Rec2  28.71 
 
 
797 aa  134  6.999999999999999e-30  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0782  DNA internalization-related competence protein ComEC/Rec2  24.25 
 
 
745 aa  132  2.0000000000000002e-29  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1702  DNA internalization-related competence protein ComEC/Rec2  25.95 
 
 
839 aa  132  2.0000000000000002e-29  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0283023 
 
 
-
 
NC_010508  Bcenmc03_2129  DNA internalization-related competence protein ComEC/Rec2  28.26 
 
 
829 aa  133  2.0000000000000002e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.326593  normal  0.0900672 
 
 
-
 
NC_008752  Aave_1352  DNA internalization-related competence protein ComEC/Rec2  30.04 
 
 
948 aa  133  2.0000000000000002e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0141053 
 
 
-
 
NC_008532  STER_1520  metallo-beta-lactamase superfamily hydrolase  25.43 
 
 
746 aa  132  2.0000000000000002e-29  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1258  ComEC/Rec2-related protein  28.06 
 
 
872 aa  131  4.0000000000000003e-29  Frankia sp. CcI3  Bacteria  normal  normal  0.0672087 
 
 
-
 
NC_007948  Bpro_3158  DNA internalization-related competence protein ComEC/Rec2  26.99 
 
 
860 aa  130  9.000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  0.0990853  normal  0.446106 
 
 
-
 
NC_009379  Pnuc_1465  DNA internalization-related competence protein ComEC/Rec2  22.9 
 
 
801 aa  130  1.0000000000000001e-28  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1205  DNA internalization-related competence protein ComEC/Rec2  26.47 
 
 
845 aa  129  2.0000000000000002e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.285892 
 
 
-
 
NC_007434  BURPS1710b_2715  DNA internalization-related competence protein ComEC/Rec2  26.35 
 
 
842 aa  129  3e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3555  beta-lactamase domain-containing protein  30.38 
 
 
300 aa  128  4.0000000000000003e-28  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000166822  n/a   
 
 
-
 
NC_013730  Slin_1920  ComEC/Rec2-related protein  27.91 
 
 
708 aa  128  4.0000000000000003e-28  Spirosoma linguale DSM 74  Bacteria  normal  0.112953  normal  0.839642 
 
 
-
 
NC_009801  EcE24377A_1011  hypothetical protein  24.54 
 
 
754 aa  128  4.0000000000000003e-28  Escherichia coli E24377A  Bacteria  hitchhiker  0.00460048  n/a   
 
 
-
 
NC_009997  Sbal195_1704  DNA internalization-related competence protein ComEC/Rec2  26.01 
 
 
783 aa  127  6e-28  Shewanella baltica OS195  Bacteria  normal  0.0286912  normal 
 
 
-
 
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