| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3404 |
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| Symbol | |
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| ID | 7972515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3586203 |
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| End bp | 3588446 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644793988 |
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| Product | DNA internalization-related competence protein ComEC/Rec2 |
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| Protein accession | YP_002945287 |
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| Protein GI | 239816377 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
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| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCTTG CGCTGGCCTG CGGTGCGCTT GCCGCCGGCG GGCTCGCGGG CTGGCGCGCG
GCGGTCTACG CAGCGGGCGC ACTCGACCCG GCCCTCGAAG GCCGCGACCT GCAGGTGGTG
GGCGTGGTCG CGCAGATGCC CCAGCGCAAC GAAGGCGGCA CGCGCTTTCG GCTCGATGTG
GAATCGGCGC GCTGGGCGGA TGGGCGCGCC GGGGCCGCGC CGCGCGTTCC GGCGCGCATC
GCGCTCGGCT GGTACCGCGA GGACAGCTCT CTCTGGGGGC GCGCGACGGA AGGCCGAGCC
ACGGCCGGCG ACGCGGCCGC GCTGCATGCG GGCGAGCGCT GGCGCCTCAC GGTGCGGCTC
AAGGCGCCGC ACGGCAATCT CAATCCGCAC GGCTTCGACA GCGAACTGTG GCTCTGGGAG
CAGGGCGTGC ATGCCAGCGG CTATGTGCGA ACCGGCGCCC GCGATGCCGC ACCGGCACAC
CTGCAATCCA CATGGCTGCA TCCGATCGAG CGTGCGCGGG AGGCGGTGCG CGACGCGGTG
TTCGAGCGCG TGGCCGACGC GCGGCAGGCC GGCGTCATCG CCGCACTCGT GACCGGCGAC
CAGGGCGCCA TCGACCGCAG CGACTGGGAT GTGTTCCGCG CCACCGGCGT GGCCCACCTG
ATGTCGATCT CGGGGCTGCA CATCACCATG TTCGCCTGGC TTGCCGCGCA TGGGGTGGGC
GCGCTCTGGC GGCGCAGCGG CCGGCTGATG CTGCGCGTTC CCGCGCCGCA GGCCGCGCTG
GCCGGCGGCG TGCTGCTGGC CGGGCTCTAT GCGCTTTTCA GCGGCTGGGG CGTGCCTTCG
CAGCGCACGG TCTGGATGCT CGCGACCGCG GCGCTGCTGC GGCTCACGGG GCGGCGCTGG
CCATGGCCCC ATGTCTGGCT GCTGATCGCG GCGGTGGTGG TGGCCGTCGA CCCGTGGGCG
CTGATGCAGG CCGGCTTCTG GCTCAGCTTC GTGGCGGTCG GCATCCTGTT CGCGACCGGC
TTCATGCGGC CGGCCGAGGA GGCGGCGGGC CGGTCGGCCC GGCTGCTGGC GTTCTTCCGC
GAGCAGTGGG TGATCACGCT GGCGCTGACG CCATTGAGCC TGCTGCTTTT CCAGCAGGTG
TCGGTGGTGG GGCTGCTGGC CAATGCGGTG GCGATCCCCT GGGTCACGCT GGTGGTCACG
CCGCTGGCGA TGCTGGGGGC GGTGGCGCCG CCGCTCTGGG ATCTTGCCGC CTGGGCCGTG
CAGGCGCTGG CCCTGCTGCT GCGCTGGCTG GCCGCACTGC CGTACGCCAC GCTCTCGATG
GCGGCGCCGC CCGTGTGGAT GGCGGCCTGC GGCGTGGCGG GCGGCGTCCT GCTTGCGATG
CGGCTGCCGT GGTCGCTGCG CACGCTGGGC CTGCCGCTCC TCTTGCCGGT GCTGCTCTGG
CACGCGCCCC GGCCGGCCGC GGGGCAGTTC GAGCTGCTGG CTGCGGACAT CGGGCAGGGC
AACGCGATCC TCGTGCGCAC CGCGACGCAC AGCCTGCTGT ACGACGCGGG CCCGCGCTAC
AGCCTCGAGA GCGACGCCGG CCATCGCGTG CTCGTGCCGC TGCTGCGCGC CTTCGACGAG
CGGCTGGACA TGCTGGTGCT GAGCCACCGC GACAGCGACC ACACCGGCGG CGCGCCCGCG
GTGCTCGCGA TGCAGCCGCA GGCGGCGCTG TCGAGCTCGA TCGAGGCCGC GCACCCGCTG
CAGTCGGTGC GCCCGGCAAG GCGCTGCGAG GCGGGGCAGC GCTGGAGCTG GGACGGCGTG
GATTTCGAGA TCCTCCATCC GGCGACGGGC GACTACCTGT CGTTCACCAA GCCCAATGCC
GTTTCTTGCG TGCTGCGCAT CGCCAACGGC GGCGCCACGG TGCTGCTGGC CGGAGACATC
GAGCGCCTGC AGGAGGCGGC GCTGGTGTCG CGCGCGGCCG ACCTGCGCGC CGACGTGCTG
CTCGCGCCGC ACCACGGCAG CAAGAGCTCG TCGAGTGCCG TGTTCCTCGA AGCGGTGCGC
CCGCGCATCG CGCTGGTCCA GGCGGGCTAC CGCAACCGTT TCGGCCATCC GGCCCCGGAA
GTGGTCGAGC GCTATGCCGC GCAGGGCGTG AAGCTGGTCG AGAGCGTGCC TTGCGGCGCC
GTGCTGTGGC GCAGCCGGGA ACCGGGCGAA GTCGGCTGCG AACGGGAGCG CAACGCCCGG
TATTGGCACC ACCGCCTGCC GTGA
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| Protein sequence | MALALACGAL AAGGLAGWRA AVYAAGALDP ALEGRDLQVV GVVAQMPQRN EGGTRFRLDV
ESARWADGRA GAAPRVPARI ALGWYREDSS LWGRATEGRA TAGDAAALHA GERWRLTVRL
KAPHGNLNPH GFDSELWLWE QGVHASGYVR TGARDAAPAH LQSTWLHPIE RAREAVRDAV
FERVADARQA GVIAALVTGD QGAIDRSDWD VFRATGVAHL MSISGLHITM FAWLAAHGVG
ALWRRSGRLM LRVPAPQAAL AGGVLLAGLY ALFSGWGVPS QRTVWMLATA ALLRLTGRRW
PWPHVWLLIA AVVVAVDPWA LMQAGFWLSF VAVGILFATG FMRPAEEAAG RSARLLAFFR
EQWVITLALT PLSLLLFQQV SVVGLLANAV AIPWVTLVVT PLAMLGAVAP PLWDLAAWAV
QALALLLRWL AALPYATLSM AAPPVWMAAC GVAGGVLLAM RLPWSLRTLG LPLLLPVLLW
HAPRPAAGQF ELLAADIGQG NAILVRTATH SLLYDAGPRY SLESDAGHRV LVPLLRAFDE
RLDMLVLSHR DSDHTGGAPA VLAMQPQAAL SSSIEAAHPL QSVRPARRCE AGQRWSWDGV
DFEILHPATG DYLSFTKPNA VSCVLRIANG GATVLLAGDI ERLQEAALVS RAADLRADVL
LAPHHGSKSS SSAVFLEAVR PRIALVQAGY RNRFGHPAPE VVERYAAQGV KLVESVPCGA
VLWRSREPGE VGCERERNAR YWHHRLP
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