Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0386 |
Symbol | |
ID | 6119597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 443346 |
End bp | 445823 |
Gene Length | 2478 bp |
Protein Length | 825 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641648459 |
Product | DNA uptake protein |
Protein accession | YP_001775030 |
Protein GI | 170729597 |
COG category | [R] General function prediction only |
COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein [TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGATA TGAAACCCGA GCAGCGACAC GTGTTGCAGC GATGTTGGGT TGACGTGTTA AGTGTGACCC GGCACGCAAC GTGCTTGCGT TACCTCGCGT TTCCGGCGTT GTTGCCGAGT GCTGTTGCGT TGCTGCTGGG TTGTCTTGCT GCACTCACCT TGCCGCGATT ACCGCCCGTA TGGGTGTTGT GGATTTTTCT GTTTGTCGGA GTAATGCTCG CTGTTATCGT GCGCCGTGTT GCTTGGTGCG GTGTGGTGTT GTTTGGTTTT GCTAACTGTT GCTTGCATGG TCAGTTTGGT TTGCGACATC AATTGTCGTT AGCGTTGGAG GGCCGCGATC TGGTGTTACG TGGTCGGATC GTTTCTTTGC CGGTTCCAGA GACCAGGCGC ACACGTTTCT TGTTGCGTGT GGATACCGAT CAAGATCAGG AACCAGCGCT GCGTGGTCGA CTGCTGCAGT TATCCTGGTA TGACGAGAAT AAGGCGGTAG CACCGGGGCC ACGCAGTGAA TTGCATGCTG GATCTGTATG GCAGCTGCAC GTGCGTCTGC GTGCGCCGCA CAGTTTGCTG AATCCCGGAG GTTTCGACAG CGAGCGTTAT GCCCTAGCCC AGGGGATTGT TGCGACCGGT TACGTACGTG CGCCGACGAT GGCACGTGAG CTGGCGGCAG CCACTGGCAT CAATGCTTGG CGGGAACGGA TGTCTGCGCG TATTGCTGAT GCGGTGTTGT TGGAAGCATC GGTGTATTTA CGTGCGTTGG CCTTGGGTGA TACCCGGGGT TTGTCTCAAC AGGATTGGGA AGTATTGCGC GCTACAGGGC TGACGCATTT GATTGCGATC TCGGGGTTCC ATGTCGGTAT GGTCGCTGGT GCCTGTGCGT TGCTTGTGTC GTTGCTGTGG CGAGTTTTCC CACATTTGGC GTGGCGTTGG CCGCGGCCAC TCGCTATGGC ACTCATTGCG GTACCGGCCG CAGCCGGCTA CACCGTCCTG GCTGGGGCGT CACTGCCCAC AGTGAGAACC GCTTTGATGA TCGGCATCGT CGCATTGGCG CGCCTCACTC GGCGTCGTGC CATGCCGGGT CATGTCCTGG GGCTTGCCTT GCTTGTCGTA CTGGTTTGGG ATCCATTAGC CATTCTTAGT GCTGGCTTCT GGCTCAGCTT TGCCGGTGTC GCTTGGTTAC TGTGGTGTAT GCAAGACGGT CATGCCGCGC CTTGGCGTGG CTTCTTATCG GCACAAGGTG TTGCAACCCT TGGGTTATTA CCATTCACCG TGGCTTTATT TGGTCAGGTT TCGTTTGTTG GGCCTTTGGC TAACTTGATT GCGATTCCGT TATGGACCTT TGTCGTTGTA CCGCTGGCGT TGTTAGGGAC TGCGCTGGAA GCGTTAGTGC CAGGGTGGGG TAGCCCCATG TGGCGTTTGG GGGGGAATTG TTTCCAATGG AGTTGGCAGC TATTCGAATA CTTGGCACAG ACTGATTTCG CATTGTGGTG GTTGCCGGAA TCTGATGGTG TTGCATTGGG GTTGGCCTTG CTGGGAGCGT TTTGGTTGCT GTTACCACGC GGTACGCCTG GTAAGTGGTT GGCGCTGTTG CTGTGGTTGC CTTTGTTGTG GCCTGAGCGT GAGCGTCCCC GCCCCGGGGA GTTTGAGATG CAGATGCTGG ACGTGGGGCA AGGACTGTCG ATTGTGGTGC GTACCTCAGG CCATACGTTG TTGTACGACG CAGGTCCAGC AGTGAATGAT GGTTTCGATG CCGGTGAGCG TGTTGTGGTG CCGGCATTAC GTGCCAGTGG CATCCGTCGC TTGGATGCAT TGGTGGCTAG TCATGCTGAT AGTGATCACG TCGGAGGTTT GCCCGCAGTC CTGAAGGCTT ATCCGGTTGA TATCAGCTAC GCTCCTCCGG ATGCTCCACT CGACGTTGAG CGCCGTTGCA GTGCTGGGGA CAGTTGGCTG TGGGATGGAG TCCAGTTTCG TTTCTTACAT CCTGCACCGC ATTCGAGGTA TTTAGGTAAC GAGTCCAGTT GTGTATTGCG TATCGACACG CGCTGGGGCA GTGCTTTGTT GACGGGTGAC ATCGGCAAAG TGGTCGAACG TGGTTTATTG AGTCAGGATC GTGAGAGTGT ACGTGCCGAT GTGGTGGTCG TACCGCATCA TGGGAGCGCC GGTTCTTCCT CGCTTGGGTT TGTCCGTGCG GTTAATGCGC GGTTAGCTTT GGTATCCAGT GGTGATGGTA ACCGCTTCGG TCATCCGCGC TGTTCGGTGG TGGAGAGCTG GAGTGAAACG GCAGATGTGT TGCTTACTGC GCATAGCGGC GCAGTACGGA TTTGGGTTGG ACAGCAGGGT CTGCAGTTAC GTGAACGCCG TGTTTGGCGT CGTCGATTTT GGGATGCGGT CGAACGTCGC CGATCCGCTG CTATCCTATC CGCCACTGAA GATGTATCCA AAGAGCGTCG GAGAAACGAG ACATGCTGGA ACTGGTAA
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Protein sequence | MDDMKPEQRH VLQRCWVDVL SVTRHATCLR YLAFPALLPS AVALLLGCLA ALTLPRLPPV WVLWIFLFVG VMLAVIVRRV AWCGVVLFGF ANCCLHGQFG LRHQLSLALE GRDLVLRGRI VSLPVPETRR TRFLLRVDTD QDQEPALRGR LLQLSWYDEN KAVAPGPRSE LHAGSVWQLH VRLRAPHSLL NPGGFDSERY ALAQGIVATG YVRAPTMARE LAAATGINAW RERMSARIAD AVLLEASVYL RALALGDTRG LSQQDWEVLR ATGLTHLIAI SGFHVGMVAG ACALLVSLLW RVFPHLAWRW PRPLAMALIA VPAAAGYTVL AGASLPTVRT ALMIGIVALA RLTRRRAMPG HVLGLALLVV LVWDPLAILS AGFWLSFAGV AWLLWCMQDG HAAPWRGFLS AQGVATLGLL PFTVALFGQV SFVGPLANLI AIPLWTFVVV PLALLGTALE ALVPGWGSPM WRLGGNCFQW SWQLFEYLAQ TDFALWWLPE SDGVALGLAL LGAFWLLLPR GTPGKWLALL LWLPLLWPER ERPRPGEFEM QMLDVGQGLS IVVRTSGHTL LYDAGPAVND GFDAGERVVV PALRASGIRR LDALVASHAD SDHVGGLPAV LKAYPVDISY APPDAPLDVE RRCSAGDSWL WDGVQFRFLH PAPHSRYLGN ESSCVLRIDT RWGSALLTGD IGKVVERGLL SQDRESVRAD VVVVPHHGSA GSSSLGFVRA VNARLALVSS GDGNRFGHPR CSVVESWSET ADVLLTAHSG AVRIWVGQQG LQLRERRVWR RRFWDAVERR RSAAILSATE DVSKERRRNE TCWNW
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