Gene Xfasm12_0386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXfasm12_0386 
Symbol 
ID6119597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXylella fastidiosa M12 
KingdomBacteria 
Replicon accessionNC_010513 
Strand
Start bp443346 
End bp445823 
Gene Length2478 bp 
Protein Length825 aa 
Translation table11 
GC content56% 
IMG OID641648459 
ProductDNA uptake protein 
Protein accessionYP_001775030 
Protein GI170729597 
COG category[R] General function prediction only 
COG ID[COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) 
TIGRFAM ID[TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGATA TGAAACCCGA GCAGCGACAC GTGTTGCAGC GATGTTGGGT TGACGTGTTA 
AGTGTGACCC GGCACGCAAC GTGCTTGCGT TACCTCGCGT TTCCGGCGTT GTTGCCGAGT
GCTGTTGCGT TGCTGCTGGG TTGTCTTGCT GCACTCACCT TGCCGCGATT ACCGCCCGTA
TGGGTGTTGT GGATTTTTCT GTTTGTCGGA GTAATGCTCG CTGTTATCGT GCGCCGTGTT
GCTTGGTGCG GTGTGGTGTT GTTTGGTTTT GCTAACTGTT GCTTGCATGG TCAGTTTGGT
TTGCGACATC AATTGTCGTT AGCGTTGGAG GGCCGCGATC TGGTGTTACG TGGTCGGATC
GTTTCTTTGC CGGTTCCAGA GACCAGGCGC ACACGTTTCT TGTTGCGTGT GGATACCGAT
CAAGATCAGG AACCAGCGCT GCGTGGTCGA CTGCTGCAGT TATCCTGGTA TGACGAGAAT
AAGGCGGTAG CACCGGGGCC ACGCAGTGAA TTGCATGCTG GATCTGTATG GCAGCTGCAC
GTGCGTCTGC GTGCGCCGCA CAGTTTGCTG AATCCCGGAG GTTTCGACAG CGAGCGTTAT
GCCCTAGCCC AGGGGATTGT TGCGACCGGT TACGTACGTG CGCCGACGAT GGCACGTGAG
CTGGCGGCAG CCACTGGCAT CAATGCTTGG CGGGAACGGA TGTCTGCGCG TATTGCTGAT
GCGGTGTTGT TGGAAGCATC GGTGTATTTA CGTGCGTTGG CCTTGGGTGA TACCCGGGGT
TTGTCTCAAC AGGATTGGGA AGTATTGCGC GCTACAGGGC TGACGCATTT GATTGCGATC
TCGGGGTTCC ATGTCGGTAT GGTCGCTGGT GCCTGTGCGT TGCTTGTGTC GTTGCTGTGG
CGAGTTTTCC CACATTTGGC GTGGCGTTGG CCGCGGCCAC TCGCTATGGC ACTCATTGCG
GTACCGGCCG CAGCCGGCTA CACCGTCCTG GCTGGGGCGT CACTGCCCAC AGTGAGAACC
GCTTTGATGA TCGGCATCGT CGCATTGGCG CGCCTCACTC GGCGTCGTGC CATGCCGGGT
CATGTCCTGG GGCTTGCCTT GCTTGTCGTA CTGGTTTGGG ATCCATTAGC CATTCTTAGT
GCTGGCTTCT GGCTCAGCTT TGCCGGTGTC GCTTGGTTAC TGTGGTGTAT GCAAGACGGT
CATGCCGCGC CTTGGCGTGG CTTCTTATCG GCACAAGGTG TTGCAACCCT TGGGTTATTA
CCATTCACCG TGGCTTTATT TGGTCAGGTT TCGTTTGTTG GGCCTTTGGC TAACTTGATT
GCGATTCCGT TATGGACCTT TGTCGTTGTA CCGCTGGCGT TGTTAGGGAC TGCGCTGGAA
GCGTTAGTGC CAGGGTGGGG TAGCCCCATG TGGCGTTTGG GGGGGAATTG TTTCCAATGG
AGTTGGCAGC TATTCGAATA CTTGGCACAG ACTGATTTCG CATTGTGGTG GTTGCCGGAA
TCTGATGGTG TTGCATTGGG GTTGGCCTTG CTGGGAGCGT TTTGGTTGCT GTTACCACGC
GGTACGCCTG GTAAGTGGTT GGCGCTGTTG CTGTGGTTGC CTTTGTTGTG GCCTGAGCGT
GAGCGTCCCC GCCCCGGGGA GTTTGAGATG CAGATGCTGG ACGTGGGGCA AGGACTGTCG
ATTGTGGTGC GTACCTCAGG CCATACGTTG TTGTACGACG CAGGTCCAGC AGTGAATGAT
GGTTTCGATG CCGGTGAGCG TGTTGTGGTG CCGGCATTAC GTGCCAGTGG CATCCGTCGC
TTGGATGCAT TGGTGGCTAG TCATGCTGAT AGTGATCACG TCGGAGGTTT GCCCGCAGTC
CTGAAGGCTT ATCCGGTTGA TATCAGCTAC GCTCCTCCGG ATGCTCCACT CGACGTTGAG
CGCCGTTGCA GTGCTGGGGA CAGTTGGCTG TGGGATGGAG TCCAGTTTCG TTTCTTACAT
CCTGCACCGC ATTCGAGGTA TTTAGGTAAC GAGTCCAGTT GTGTATTGCG TATCGACACG
CGCTGGGGCA GTGCTTTGTT GACGGGTGAC ATCGGCAAAG TGGTCGAACG TGGTTTATTG
AGTCAGGATC GTGAGAGTGT ACGTGCCGAT GTGGTGGTCG TACCGCATCA TGGGAGCGCC
GGTTCTTCCT CGCTTGGGTT TGTCCGTGCG GTTAATGCGC GGTTAGCTTT GGTATCCAGT
GGTGATGGTA ACCGCTTCGG TCATCCGCGC TGTTCGGTGG TGGAGAGCTG GAGTGAAACG
GCAGATGTGT TGCTTACTGC GCATAGCGGC GCAGTACGGA TTTGGGTTGG ACAGCAGGGT
CTGCAGTTAC GTGAACGCCG TGTTTGGCGT CGTCGATTTT GGGATGCGGT CGAACGTCGC
CGATCCGCTG CTATCCTATC CGCCACTGAA GATGTATCCA AAGAGCGTCG GAGAAACGAG
ACATGCTGGA ACTGGTAA
 
Protein sequence
MDDMKPEQRH VLQRCWVDVL SVTRHATCLR YLAFPALLPS AVALLLGCLA ALTLPRLPPV 
WVLWIFLFVG VMLAVIVRRV AWCGVVLFGF ANCCLHGQFG LRHQLSLALE GRDLVLRGRI
VSLPVPETRR TRFLLRVDTD QDQEPALRGR LLQLSWYDEN KAVAPGPRSE LHAGSVWQLH
VRLRAPHSLL NPGGFDSERY ALAQGIVATG YVRAPTMARE LAAATGINAW RERMSARIAD
AVLLEASVYL RALALGDTRG LSQQDWEVLR ATGLTHLIAI SGFHVGMVAG ACALLVSLLW
RVFPHLAWRW PRPLAMALIA VPAAAGYTVL AGASLPTVRT ALMIGIVALA RLTRRRAMPG
HVLGLALLVV LVWDPLAILS AGFWLSFAGV AWLLWCMQDG HAAPWRGFLS AQGVATLGLL
PFTVALFGQV SFVGPLANLI AIPLWTFVVV PLALLGTALE ALVPGWGSPM WRLGGNCFQW
SWQLFEYLAQ TDFALWWLPE SDGVALGLAL LGAFWLLLPR GTPGKWLALL LWLPLLWPER
ERPRPGEFEM QMLDVGQGLS IVVRTSGHTL LYDAGPAVND GFDAGERVVV PALRASGIRR
LDALVASHAD SDHVGGLPAV LKAYPVDISY APPDAPLDVE RRCSAGDSWL WDGVQFRFLH
PAPHSRYLGN ESSCVLRIDT RWGSALLTGD IGKVVERGLL SQDRESVRAD VVVVPHHGSA
GSSSLGFVRA VNARLALVSS GDGNRFGHPR CSVVESWSET ADVLLTAHSG AVRIWVGQQG
LQLRERRVWR RRFWDAVERR RSAAILSATE DVSKERRRNE TCWNW