Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1779 |
Symbol | |
ID | 4172027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2136711 |
End bp | 2138999 |
Gene Length | 2289 bp |
Protein Length | 762 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054789 |
Product | DNA internalization-related competence protein ComEC/Rec2 |
Protein accession | YP_661354 |
Protein GI | 109898099 |
COG category | [R] General function prediction only |
COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein [TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGGAA GACTTTTCAG TTTTATTGCA GCAAGCATAT CTGCGCTTTT CTGGTTGTCT CTGCCTGCGC TCGCCATTCT ACCAATAATT CTAACGCTTG CCATACTGCT TTGGCGTTTA CCTAAGGGTA ATTCAACCCT TTTGAGTATT AAATCTTTAA GTTGCAGCTT TCTACTCGGC ATTTTTTGGA TGGCAAGTGT AGGGCATTGG CAGCAAACTT GGCAACTACC ATCAAGCGAT TTTACCCAAG GTGTGTGGGT TAAAGGGCAG GTGAAAAGTT TAATCGATGA CGAAAATAGC GCACGATTTA ACCTCAAGAT ATCCAGTATT GATGACAGGG CGTTAGCCAA GGATGTGCTA ATCCGCCTCA GTTGGACGCA GCCAACATGG CGTTTAAAGC AAGGGCAGTT GGCTCAATTG TGGGTTAAGT TAAAGCCTCC TCATGGGCTG GCGAATCAAG GTGGTTTTCA TTATCAGCAG TGGCTGTTTA GTCAAAGTGT TGTGGCAACG GGCTACGTAA AAACTAATGA AAACAATAGT CTAGTTGGAT CTGATAGTTC TGTTCGCCAG CGTCTGCTCG ACGATATTAT GGCTTTAAAG CTGGATACAA CGCCCTGGAT TGCAGCGCTT TCTTTGGGGC ATAGAGGGCT ACTGACACCT GATGATTGGT CTTTGGTACA ACGGACTGGT ATCGCCCATT TGATAGCAAT ATCTGGCCTA CATTTGGCCC TTGTAGGCAG TATTTGTTAT TTGCTTATCG CCAGTATCTT ACTTTTTTGT TACCGAGTGT TAATCAAGGG GCAAAACGCT AACTTCTATT TCATCAGCGT CTTCATCACG CTTATTACCA CGCTAGGGTA TGCCTATTTA GCAGGCTTCG GTTTACCAGC GCTACGGGCA TGGCTTATGT TGGCGCTAAC GGCCTTGCTT GTTTTTAGTT GCACCCATTG GGGGTTTGGA CGAATTTTGT TGGTAGGAGT GAGCGCATTT ATTGTACTTT TTCCTTTGAG TCTTTTTGGT CAAAGCTTCT GGCTGAGTTT TGGAGCGGTC TCAATTATCG GCTTCGTATT TTGGCGCTGG CCGGTGCGCC ATCGAGGATT TTCGATTAAA ACCTGGTTTG CTAGTATGTG CCGTTTACAG CTGGCCCTAA GCCTCTTAAT GCTGCCTTTG GTGGCGTGGC AGTTCTCATT TGTATCAGTC GTGTCGCCTG TCATCAATTT AGTGGCGGTT CCTGTTGTAA CACTGATCAT TGTGCCCATG TGTTTGCTAG GAGTGATAAT GATGTTGCTA TCCATACCGT ACTGGAAACA TGTATTTACC CTGGTGGATG TAGGGTTACA GTTTCTACTG GATAAACTCA GTCTAATGGA GAGTTGGTCC GGAGCCGCTT TTAGCATTCA AGCCATACCT GGGATTGTGT GGGTTTGCTT TACTATTGCA GCGCTAACTT TTTTGTTGCC AAGGGGGCTA ATACCGCGCC TGCTAGCGCT GGTGCTTTGT ATACCATTAC TAACGTTTGG ACTCACCCCT GCCAAACGCG ACTGGCAAAT CAATGTGCTG GACGTGGGGC AGGGCTTATC GGTTGTGGTG CTCAAAGCTG ACAAAGCTTT GGTTTACGAT GTAGGAGCGG CGTACCCCAG TGGGTTTAAT ATGGCCGATA GCGTGTTGTT GCCTTTTCTG AGAAGCAAAG GCTTGCGTGA AGTGAGTGCG CTCGTTGTGA GTCATTTTGA TAATGACCAC AGCGGCAGTT TGCCGGCGCT ACGTCAGAAA ATGGCGATAG AGACCCTGTT CACCACACAA GACTTGTGTA GGCAAAATTG GCAGCTCACG TGGCAAGGGC TGAGCGTCAA GGCCTTGTGG CCAGACGACC CGAATTTGTA TAGCGATAAC AATAGTTCTT GCGTACTGCG AATTAGCGAC GGTGATTTTA GTCTGTTGTT AACTGGGGAT ATAGACGCCT CGGTAGAGGC AAAGTTAATA GCCGGTTACG GCACAGCTTT ACGATCGGAT GTGCTAATTG CCCCTCATCA TGGCAGTAAT ACCTCTTCCT CTAGGGTATT TATTGATACG GTAAAGCCCG ACTTTGTTGT GTTCAGTCAA GGGTTCATGA ATCGGTGGGG ATTTCCAAAA ACGGCCGTGG TAGAGCGGTA TCAACAAACA GATGCACAGC TGTATCGCAC ATCAAAGCAT GGGCAGGTTC AAATAAGCAT TAACGACAGT GGCGCTCAGG TGAGTACATT TCGCCAGAAT ATCTCCCCAT ACTGGTATGC AAATCAGACA ATTGATTGA
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Protein sequence | MDGRLFSFIA ASISALFWLS LPALAILPII LTLAILLWRL PKGNSTLLSI KSLSCSFLLG IFWMASVGHW QQTWQLPSSD FTQGVWVKGQ VKSLIDDENS ARFNLKISSI DDRALAKDVL IRLSWTQPTW RLKQGQLAQL WVKLKPPHGL ANQGGFHYQQ WLFSQSVVAT GYVKTNENNS LVGSDSSVRQ RLLDDIMALK LDTTPWIAAL SLGHRGLLTP DDWSLVQRTG IAHLIAISGL HLALVGSICY LLIASILLFC YRVLIKGQNA NFYFISVFIT LITTLGYAYL AGFGLPALRA WLMLALTALL VFSCTHWGFG RILLVGVSAF IVLFPLSLFG QSFWLSFGAV SIIGFVFWRW PVRHRGFSIK TWFASMCRLQ LALSLLMLPL VAWQFSFVSV VSPVINLVAV PVVTLIIVPM CLLGVIMMLL SIPYWKHVFT LVDVGLQFLL DKLSLMESWS GAAFSIQAIP GIVWVCFTIA ALTFLLPRGL IPRLLALVLC IPLLTFGLTP AKRDWQINVL DVGQGLSVVV LKADKALVYD VGAAYPSGFN MADSVLLPFL RSKGLREVSA LVVSHFDNDH SGSLPALRQK MAIETLFTTQ DLCRQNWQLT WQGLSVKALW PDDPNLYSDN NSSCVLRISD GDFSLLLTGD IDASVEAKLI AGYGTALRSD VLIAPHHGSN TSSSRVFIDT VKPDFVVFSQ GFMNRWGFPK TAVVERYQQT DAQLYRTSKH GQVQISINDS GAQVSTFRQN ISPYWYANQT ID
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