| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1779 |
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| Symbol | |
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| ID | 4172027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2136711 |
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| End bp | 2138999 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054789 |
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| Product | DNA internalization-related competence protein ComEC/Rec2 |
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| Protein accession | YP_661354 |
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| Protein GI | 109898099 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
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| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGGAA GACTTTTCAG TTTTATTGCA GCAAGCATAT CTGCGCTTTT CTGGTTGTCT
CTGCCTGCGC TCGCCATTCT ACCAATAATT CTAACGCTTG CCATACTGCT TTGGCGTTTA
CCTAAGGGTA ATTCAACCCT TTTGAGTATT AAATCTTTAA GTTGCAGCTT TCTACTCGGC
ATTTTTTGGA TGGCAAGTGT AGGGCATTGG CAGCAAACTT GGCAACTACC ATCAAGCGAT
TTTACCCAAG GTGTGTGGGT TAAAGGGCAG GTGAAAAGTT TAATCGATGA CGAAAATAGC
GCACGATTTA ACCTCAAGAT ATCCAGTATT GATGACAGGG CGTTAGCCAA GGATGTGCTA
ATCCGCCTCA GTTGGACGCA GCCAACATGG CGTTTAAAGC AAGGGCAGTT GGCTCAATTG
TGGGTTAAGT TAAAGCCTCC TCATGGGCTG GCGAATCAAG GTGGTTTTCA TTATCAGCAG
TGGCTGTTTA GTCAAAGTGT TGTGGCAACG GGCTACGTAA AAACTAATGA AAACAATAGT
CTAGTTGGAT CTGATAGTTC TGTTCGCCAG CGTCTGCTCG ACGATATTAT GGCTTTAAAG
CTGGATACAA CGCCCTGGAT TGCAGCGCTT TCTTTGGGGC ATAGAGGGCT ACTGACACCT
GATGATTGGT CTTTGGTACA ACGGACTGGT ATCGCCCATT TGATAGCAAT ATCTGGCCTA
CATTTGGCCC TTGTAGGCAG TATTTGTTAT TTGCTTATCG CCAGTATCTT ACTTTTTTGT
TACCGAGTGT TAATCAAGGG GCAAAACGCT AACTTCTATT TCATCAGCGT CTTCATCACG
CTTATTACCA CGCTAGGGTA TGCCTATTTA GCAGGCTTCG GTTTACCAGC GCTACGGGCA
TGGCTTATGT TGGCGCTAAC GGCCTTGCTT GTTTTTAGTT GCACCCATTG GGGGTTTGGA
CGAATTTTGT TGGTAGGAGT GAGCGCATTT ATTGTACTTT TTCCTTTGAG TCTTTTTGGT
CAAAGCTTCT GGCTGAGTTT TGGAGCGGTC TCAATTATCG GCTTCGTATT TTGGCGCTGG
CCGGTGCGCC ATCGAGGATT TTCGATTAAA ACCTGGTTTG CTAGTATGTG CCGTTTACAG
CTGGCCCTAA GCCTCTTAAT GCTGCCTTTG GTGGCGTGGC AGTTCTCATT TGTATCAGTC
GTGTCGCCTG TCATCAATTT AGTGGCGGTT CCTGTTGTAA CACTGATCAT TGTGCCCATG
TGTTTGCTAG GAGTGATAAT GATGTTGCTA TCCATACCGT ACTGGAAACA TGTATTTACC
CTGGTGGATG TAGGGTTACA GTTTCTACTG GATAAACTCA GTCTAATGGA GAGTTGGTCC
GGAGCCGCTT TTAGCATTCA AGCCATACCT GGGATTGTGT GGGTTTGCTT TACTATTGCA
GCGCTAACTT TTTTGTTGCC AAGGGGGCTA ATACCGCGCC TGCTAGCGCT GGTGCTTTGT
ATACCATTAC TAACGTTTGG ACTCACCCCT GCCAAACGCG ACTGGCAAAT CAATGTGCTG
GACGTGGGGC AGGGCTTATC GGTTGTGGTG CTCAAAGCTG ACAAAGCTTT GGTTTACGAT
GTAGGAGCGG CGTACCCCAG TGGGTTTAAT ATGGCCGATA GCGTGTTGTT GCCTTTTCTG
AGAAGCAAAG GCTTGCGTGA AGTGAGTGCG CTCGTTGTGA GTCATTTTGA TAATGACCAC
AGCGGCAGTT TGCCGGCGCT ACGTCAGAAA ATGGCGATAG AGACCCTGTT CACCACACAA
GACTTGTGTA GGCAAAATTG GCAGCTCACG TGGCAAGGGC TGAGCGTCAA GGCCTTGTGG
CCAGACGACC CGAATTTGTA TAGCGATAAC AATAGTTCTT GCGTACTGCG AATTAGCGAC
GGTGATTTTA GTCTGTTGTT AACTGGGGAT ATAGACGCCT CGGTAGAGGC AAAGTTAATA
GCCGGTTACG GCACAGCTTT ACGATCGGAT GTGCTAATTG CCCCTCATCA TGGCAGTAAT
ACCTCTTCCT CTAGGGTATT TATTGATACG GTAAAGCCCG ACTTTGTTGT GTTCAGTCAA
GGGTTCATGA ATCGGTGGGG ATTTCCAAAA ACGGCCGTGG TAGAGCGGTA TCAACAAACA
GATGCACAGC TGTATCGCAC ATCAAAGCAT GGGCAGGTTC AAATAAGCAT TAACGACAGT
GGCGCTCAGG TGAGTACATT TCGCCAGAAT ATCTCCCCAT ACTGGTATGC AAATCAGACA
ATTGATTGA
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| Protein sequence | MDGRLFSFIA ASISALFWLS LPALAILPII LTLAILLWRL PKGNSTLLSI KSLSCSFLLG
IFWMASVGHW QQTWQLPSSD FTQGVWVKGQ VKSLIDDENS ARFNLKISSI DDRALAKDVL
IRLSWTQPTW RLKQGQLAQL WVKLKPPHGL ANQGGFHYQQ WLFSQSVVAT GYVKTNENNS
LVGSDSSVRQ RLLDDIMALK LDTTPWIAAL SLGHRGLLTP DDWSLVQRTG IAHLIAISGL
HLALVGSICY LLIASILLFC YRVLIKGQNA NFYFISVFIT LITTLGYAYL AGFGLPALRA
WLMLALTALL VFSCTHWGFG RILLVGVSAF IVLFPLSLFG QSFWLSFGAV SIIGFVFWRW
PVRHRGFSIK TWFASMCRLQ LALSLLMLPL VAWQFSFVSV VSPVINLVAV PVVTLIIVPM
CLLGVIMMLL SIPYWKHVFT LVDVGLQFLL DKLSLMESWS GAAFSIQAIP GIVWVCFTIA
ALTFLLPRGL IPRLLALVLC IPLLTFGLTP AKRDWQINVL DVGQGLSVVV LKADKALVYD
VGAAYPSGFN MADSVLLPFL RSKGLREVSA LVVSHFDNDH SGSLPALRQK MAIETLFTTQ
DLCRQNWQLT WQGLSVKALW PDDPNLYSDN NSSCVLRISD GDFSLLLTGD IDASVEAKLI
AGYGTALRSD VLIAPHHGSN TSSSRVFIDT VKPDFVVFSQ GFMNRWGFPK TAVVERYQQT
DAQLYRTSKH GQVQISINDS GAQVSTFRQN ISPYWYANQT ID
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