Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1120 |
Symbol | |
ID | 1219935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1176593 |
End bp | 1179136 |
Gene Length | 2544 bp |
Protein Length | 847 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637237489 |
Product | putative transporter DNA uptake transmembrane protein |
Protein accession | NP_519241 |
Protein GI | 17545839 |
COG category | [R] General function prediction only |
COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein [TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0978754 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.511509 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCCC TGCTGATCGG CTTCGTCGCA GGGTGCATGG CGCTGCAGAC GCGGCCGGCG CTGGCGCCGG TGTGGCAGCC GGCGCTGCTT GGGCTTGCTT GCCTGCTGGC GATGGCGTTG CTGCGGCGCG GCGCTCGGTT GCCCAGGCTC GTTCCCGTGA TGGCAGTGCT GGCGGCGGCC TGCGCCGGCT TCGGCTGGAG CGATTGGCGC GCGCAGCAGC GCTTGTCCGT GGTGCTGGCG CCCGCATGGG AGGGCAAGGA CATCCGCGCG ACGGGCGTCG TGGCCGAGCT GCCCGAAGTC ACCGAGGACG CCACGCGCTT CCTGTTCCGG ATTGAATCCA GCGACGCGGG CGATGCCGTA CCGCCGCGCG TGCGGCTGTC GTGGTACGGC CTGCGCAGCT GGCATGAGCG GCAGCGGGAG GCGGAGGCCG CCACCGATCG CCGCGCCGGC ATTCCCGATC TGCAGCCCGG CCAGCGCTGG CAGCTGACGC TGCGGCTCAA GCGGCCGCAC AGCCTGATGA ATCCCGGCGG CTTCGATGGC GAATACGCGA TGCTTGCCGA CGATGTCCGT GCCGCGGGCT ACGTGTACAC GGGCAAACGC GCGCGCAATG CGTTGATGGG CGAAGCCGAT GCCGGTTCCG GTGTTGGGCT CCGTGTCGAG CGCTGGCGCG CCGCGGTGCG GCGGCATCTC CTGGCTGCGC TGCCCGAGGC ACGCTACGCG CCGGTGATCG TCGCCCTGGT GGTGGGCGAC CAGAGCGGCA TCGCGCAGGC GGATTGGGAG CGCTTCCGCC GCACCGGCAT CAGCCATCTC GTCAGCATTT CCGGTCTGCA CATCACGATG ATCGCCGGGC TGTTCGGCGC GCTGTGGATG GCGCTGTGGC GGCGCTCGTT CGGCCTGGCC CGCTGGCTGC GCACACCGCT GCCGCTGCGC ATGCCGGCCC AGCGTGCGGG CGCCGTCGCC GCCATGGCGG CGGCGTTTGC CTATTGCCTG CTGGCGGGGA TGGGCGTGCC GGCGCAGCGC ACGCTGCTGA TGCTCGCGAC CGTTGCCGTG GCGCGGCTGG CCGATCGCAG CGTGCCGGTC AGCCTGTCGC TGTGCTGGGC GGCGGCCTTG GTGGCGCTGG TGGATCCGTG GGCGGTCATG TCGGCGGGAG GCTGGCTGTC GTTCGGCGCC GTGGCGGTCA TCTTCCTGGC CGCGCGGATC GTTGCCGCCG ATGCGCGGGA CGACGTCCGC CGGCCCGCCT GGCCGGTGCG CGCCTGGCGC GGCCTGCGCG GCGCCGCGCG CGTCCAGCTG GCCGTGACGT TCGGCCTGCT GCCGTTGACC TTGCTGCTGT TCCAGCAGGT CTCGGTGGTG TCGGCCGTGG CCAACGCGCT GGCGATCCCG GTGGTCAGCT TTGTCACGAC GCCGCTGGCG CTGATGGGCA CGGCGTTGCC CGAGCCATGG TCGCAGCCGG TGCTGATATG GGCCGAGGCC AGCTTCGCCT GGCTCATGCC GTGGCTGGAT GCGCTGGCGC TGCCCGGCGG GTCGGTGTGG GTGGCGCCCG CCGCGCCGGC CTGGGCCTGG GGGCTGGCGG TGGTCGGTGT GCCGTTGCTG CTCGTGCCGG GTGGGTATCG CGCCTGGGCC TGGCGGGCGC AGGGCGCGGT GCTGCTGCTG CCGATGCTGC TGGCACGCGC ACCGGCGCCG CCGCCGGGCG AGTTCCGCAT GGTCGCATTC GACATCGGCC AGGGCGCCGC CACGCTGGTC GAGACGGCCG GCCACCGGCT GCTGTTCGAT ACCGGTCCCC GCCAAGGCGA CCTGGCCGAT GCCGCCGATC GCGTGATCGT CCCGTATCTG CGCGGACATG GGGTGCAGGC CATCGACACG CTGGTGGTCA GCCATGAGGA TAGCGATCAC GCCGGCGGCA CCGAAACGGT GATGGCCGGT GTGCCGGTGC GCACCATGCT GGCGTCCCTG CCGCCCGGCC ACGGGCTGGA GCGGCAGGCC CGCGCGCTCG GCATCGAGCC CGCAGGCTGC GTGGCCGGGC AGCGCTGGGC ATGGGACGGC GTCGCCTTCG AAATCCTGTA TCCGGTGCAG GTGCCCTCCG ATCGGGCGGC CGTGTCCAGC AATGCCCGCA GCTGTGTGCT GCGCATCGCC AACGCGCGCT ACGCCGCCAT GCTGGCCGGC GACATCGGCC GCGCCCAGGA AGCGGCGCTG ATTGCCGCCG AAGCGCCGGA GCGGCTCATG GCAGATATCT TGCTTGTGCC CCATCACGGC AGCAGGACGA GCTCCAGCGG CGCGTTCCTG GACGCGGTCT CTGCGCAGGT GGCGGTGTTC CAGGTCGGCT ACCGCAACCG GTACGGTCAT CCGCATCCGC AGGTCTGGCA GCGCTACGGC GCGCGCGGCA TCGAGCGGCT GCGCACCGAT GCCACCGGGG CCGTCGTCAT CGAGACGCGC GGCGATGCGC TGGCGGTGCG GACGGCGCGG TCGATGCGGC CGCGCTACTG GTCCTCGGCG CTGGAGGTGG CCGCCCTGGC AGAGACCACG GAGCCCACGG GCGCGCAGCC GTAA
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Protein sequence | MRALLIGFVA GCMALQTRPA LAPVWQPALL GLACLLAMAL LRRGARLPRL VPVMAVLAAA CAGFGWSDWR AQQRLSVVLA PAWEGKDIRA TGVVAELPEV TEDATRFLFR IESSDAGDAV PPRVRLSWYG LRSWHERQRE AEAATDRRAG IPDLQPGQRW QLTLRLKRPH SLMNPGGFDG EYAMLADDVR AAGYVYTGKR ARNALMGEAD AGSGVGLRVE RWRAAVRRHL LAALPEARYA PVIVALVVGD QSGIAQADWE RFRRTGISHL VSISGLHITM IAGLFGALWM ALWRRSFGLA RWLRTPLPLR MPAQRAGAVA AMAAAFAYCL LAGMGVPAQR TLLMLATVAV ARLADRSVPV SLSLCWAAAL VALVDPWAVM SAGGWLSFGA VAVIFLAARI VAADARDDVR RPAWPVRAWR GLRGAARVQL AVTFGLLPLT LLLFQQVSVV SAVANALAIP VVSFVTTPLA LMGTALPEPW SQPVLIWAEA SFAWLMPWLD ALALPGGSVW VAPAAPAWAW GLAVVGVPLL LVPGGYRAWA WRAQGAVLLL PMLLARAPAP PPGEFRMVAF DIGQGAATLV ETAGHRLLFD TGPRQGDLAD AADRVIVPYL RGHGVQAIDT LVVSHEDSDH AGGTETVMAG VPVRTMLASL PPGHGLERQA RALGIEPAGC VAGQRWAWDG VAFEILYPVQ VPSDRAAVSS NARSCVLRIA NARYAAMLAG DIGRAQEAAL IAAEAPERLM ADILLVPHHG SRTSSSGAFL DAVSAQVAVF QVGYRNRYGH PHPQVWQRYG ARGIERLRTD ATGAVVIETR GDALAVRTAR SMRPRYWSSA LEVAALAETT EPTGAQP
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