41 homologs were found in PanDaTox collection
for query gene DhcVS_532 on replicon NC_013552
Organism: Dehalococcoides sp. VS



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013552  DhcVS_532  hypothetical protein  100 
 
 		 336 aa  700    Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00368182  n/a   
 
 
-
 
NC_002936  DET0591  hypothetical protein  95.24 
 
 		 339 aa  669    Dehalococcoides ethenogenes 195  Bacteria  normal  0.114388  n/a   
 
 
-
 
NC_009455  DehaBAV1_0566  2-hydroxyglutaryl-CoA dehydratase, D-component  89.88 
 
 		 339 aa  641    Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00128016  n/a   
 
 
-
 
NC_007517  Gmet_0545  hypothetical protein  48.14 
 
 		 325 aa  325  5e-88  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU2925  hypothetical protein  48.45 
 
 		 324 aa  325  6e-88  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_0485  2-hydroxyglutaryl-CoA dehydratase, D-component  47.38 
 
 		 333 aa  317  2e-85  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_2726  benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit  48.16 
 
 		 327 aa  315  9e-85  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_0387  2-hydroxyglutaryl-CoA dehydratase D-component  45.73 
 
 		 327 aa  308  8e-83  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_009012  Cthe_3103  2-hydroxyglutaryl-CoA dehydratase, D-component  45.26 
 
 		 328 aa  305  9.000000000000001e-82  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_008346  Swol_0450  hypothetical protein  43.96 
 
 		 325 aa  300  2e-80  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_0393  2-hydroxyglutaryl-CoA dehydratase D-component  44.21 
 
 		 327 aa  295  1e-78  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_0480  2-hydroxyglutaryl-CoA dehydratase D-component  44 
 
 		 326 aa  289  4e-77  Ammonifex degensii KC4  Bacteria  normal  0.389098  n/a   
 
 
-
 
NC_013216  Dtox_3625  2-hydroxyglutaryl-CoA dehydratase D-component  43.83 
 
 		 325 aa  289  4e-77  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000225912  normal  0.25533 
 
 
-
 
NC_009253  Dred_2688  2-hydroxyglutaryl-CoA dehydratase, D-component  43.52 
 
 		 325 aa  289  5.0000000000000004e-77  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00668427  n/a   
 
 
-
 
NC_011830  Dhaf_4399  2-hydroxyglutaryl-CoA dehydratase D-component  44.44 
 
 		 335 aa  289  6e-77  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000214001  n/a   
 
 
-
 
NC_010424  Daud_1507  2-hydroxyglutaryl-CoA dehydratase, D-component  43.87 
 
 		 326 aa  288  1e-76  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_009634  Mevan_1356  2-hydroxyglutaryl-CoA dehydratase D-component  26.85 
 
 		 373 aa  60.1  0.00000006  Methanococcus vannielii SB  Archaea  normal  0.0888918  n/a   
 
 
-
 
NC_011899  Hore_16080  2-hydroxyglutaryl-CoA dehydratase D-component  23.58 
 
 		 426 aa  57.4  0.0000003  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_009635  Maeo_1346  2-hydroxyglutaryl-CoA dehydratase D-component  23.76 
 
 		 372 aa  51.6  0.00002  Methanococcus aeolicus Nankai-3  Archaea  normal  0.120946  n/a   
 
 
-
 
NC_002939  GSU2519  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  24.36 
 
 		 387 aa  51.2  0.00003  Geobacter sulfurreducens PCA  Bacteria  normal  0.321633  n/a   
 
 
-
 
NC_013512  Sdel_2024  2-hydroxyglutaryl-CoA dehydratase D-component  23.77 
 
 		 439 aa  50.8  0.00003  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_0387  2-hydroxyglutaryl-CoA dehydratase D-component  25.49 
 
 		 426 aa  50.1  0.00005  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009637  MmarC7_1346  2-hydroxyglutaryl-CoA dehydratase D-component  26.17 
 
 		 373 aa  49.7  0.00006  Methanococcus maripaludis C7  Archaea  normal  0.922776  normal  0.0249494 
 
 
-
 
NC_008346  Swol_0410  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  26.09 
 
 		 378 aa  49.7  0.00008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.732282  n/a   
 
 
-
 
NC_009135  MmarC5_0834  2-hydroxyglutaryl-CoA dehydratase, D-component  25.15 
 
 		 373 aa  47.8  0.0003  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_007644  Moth_1006  2-hydroxyglutaryl-CoA dehydratase, D-component  26.8 
 
 		 421 aa  47.8  0.0003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0695891  hitchhiker  0.000177823 
 
 
-
 
NC_007644  Moth_1007  2-hydroxyglutaryl-CoA dehydratase, D-component  29.34 
 
 		 349 aa  47.8  0.0003  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.0000000530359  hitchhiker  0.000167288 
 
 
-
 
NC_009634  Mevan_1623  2-hydroxyglutaryl-CoA dehydratase D-component  26.43 
 
 		 373 aa  47.8  0.0003  Methanococcus vannielii SB  Archaea  decreased coverage  0.000208392  n/a   
 
 
-
 
NC_013173  Dbac_1927  2-hydroxyglutaryl-CoA dehydratase D-component  24.35 
 
 		 425 aa  47.4  0.0004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.756388  n/a   
 
 
-
 
NC_009637  MmarC7_0081  2-hydroxyglutaryl-CoA dehydratase D-component  22.38 
 
 		 373 aa  46.6  0.0006  Methanococcus maripaludis C7  Archaea  hitchhiker  0.00790728  hitchhiker  0.00027984 
 
 
-
 
NC_009975  MmarC6_1821  2-hydroxyglutaryl-CoA dehydratase D-component  23.9 
 
 		 373 aa  46.2  0.0008  Methanococcus maripaludis C6  Archaea  normal  1  n/a   
 
 
-
 
NC_009253  Dred_1278  2-hydroxyglutaryl-CoA dehydratase, D-component  23.72 
 
 		 385 aa  46.2  0.0008  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007519  Dde_0090  2-hydroxyglutaryl-CoA dehydratase, beta subunit-like  22.25 
 
 		 426 aa  46.2  0.0009  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_1329  2-hydroxyglutaryl-CoA dehydratase, D-component  25.71 
 
 		 373 aa  45.8  0.001  Methanococcus maripaludis C5  Archaea  normal  0.360165  n/a   
 
 
-
 
NC_010718  Nther_1771  2-hydroxyglutaryl-CoA dehydratase D-component  22.78 
 
 		 419 aa  45.4  0.001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.433973 
 
 
-
 
NC_009712  Mboo_0866  2-hydroxyglutaryl-CoA dehydratase, D-component  25.39 
 
 		 383 aa  45.8  0.001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.327302  normal  1 
 
 
-
 
NC_007644  Moth_1446  2-hydroxyglutaryl-CoA dehydratase, D-component  24.48 
 
 		 381 aa  45.1  0.002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.629308  normal  0.054659 
 
 
-
 
NC_008554  Sfum_3256  2-hydroxyglutaryl-CoA dehydratase, D-component  25.67 
 
 		 423 aa  43.9  0.004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009975  MmarC6_0607  2-hydroxyglutaryl-CoA dehydratase D-component  25 
 
 		 373 aa  43.1  0.006  Methanococcus maripaludis C6  Archaea  normal  0.422107  n/a   
 
 
-
 
NC_007644  Moth_1418  2-hydroxyglutaryl-CoA dehydratase, D-component  25 
 
 		 436 aa  42.7  0.008  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00133287  normal  0.906732 
 
 
-
 
NC_008554  Sfum_3161  2-hydroxyglutaryl-CoA dehydratase, D-component  23.88 
 
 		 382 aa  42.7  0.009  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
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