Gene Dhaf_4399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_4399 
Symbol 
ID7261428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp4670023 
End bp4671030 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content51% 
IMG OID643564320 
Product2-hydroxyglutaryl-CoA dehydratase D-component 
Protein accessionYP_002460840 
Protein GI219670405 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.000000214001 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAAA TTGGGTTGAC TACGACAGTA CCGGTCGAAG TAATTTATGC AGCCGGGGAT 
ACACCGGTGG ATTTGAATAA TATTTTTATC TCGGATACCA GGGAAGCGAT GCTGAGGATT 
GAGGAGGCGG AGCTGGCCGG GTACCCACGG AATGTGTGCG GCTGGATTAA GGGCTTGTAT 
GCGACGGCTC TTAAAAGCCC GGAAATCAAG AAGATCGTGG CGGTAACCCA GGGGGATTGC 
AGCAACACCC ATGCCTTGAT GGAGACTTGG TCGGAAGAGG GAATCGAGAT TATTCCTTTT 
GCCTTTCCCT ATGATCGGGA TGGAGATATG CTCAGACTCC AATTGGAGAA GCTGATCACG 
GCTCTGGGGA CCACCTGGGA TCAGGTGCGG GAGCAAAAGG TCCGTTTGGA TCAGGTACGT 
CAGCTGGCCT GGGAGATCGA TCGCCTGACT TGGCAAGAGA ATCAGGTCAG GGGTTTTGAA 
AATCATCTCC ACCTGGTTTC CTGCTCAGAT TTCAATGGAG ATCCGGAGGG ATTTGCCCGG 
GATCTGGAAG GCTTCATTGC CGAGGCCAGA GAACGGGAGC CGCTTAACCT TCAATTCAAA 
GGCCGTAAAA AAAGAGAACT CCGGCTTGGG TTCATGGGAG TGCCGCCGAT TATGCCGGAT 
CTTTATAATT TCCTGGAGGA GCATGGGGCA CGGGTGGTCT TTAATGAAGT GCAAAGGCAA 
TTCAGCATGC CCTTTGCCAC CGAAGATATC GTGGAGCAAT ATCAGCTTTA TACTTATCCG 
TATAATGTCT TTGGACGGAT TGAGGATGTG GCGCAGGAAG CGGAACGGCG GCAACTGGAT 
GGGCTGATCC ATTATACTCA GAGCTTCTGC TATCGCCAGA TTGAAGACTT GATTGTCCGC 
AGACGCTTGG ATTATCCGAT TCTCAATCTT GAAGGTGAGA ATCCTACAGG TTTGGATGCT 
CGGAGCAAAA TGAGGCTGGA ATCCTTTTTG CAGATGCTCC GCGATTGA
 
Protein sequence
MSKIGLTTTV PVEVIYAAGD TPVDLNNIFI SDTREAMLRI EEAELAGYPR NVCGWIKGLY 
ATALKSPEIK KIVAVTQGDC SNTHALMETW SEEGIEIIPF AFPYDRDGDM LRLQLEKLIT 
ALGTTWDQVR EQKVRLDQVR QLAWEIDRLT WQENQVRGFE NHLHLVSCSD FNGDPEGFAR 
DLEGFIAEAR EREPLNLQFK GRKKRELRLG FMGVPPIMPD LYNFLEEHGA RVVFNEVQRQ 
FSMPFATEDI VEQYQLYTYP YNVFGRIEDV AQEAERRQLD GLIHYTQSFC YRQIEDLIVR 
RRLDYPILNL EGENPTGLDA RSKMRLESFL QMLRD