More than 300 homologs were found in PanDaTox collection
for query gene Acid345_4356 on replicon NC_008009
Organism: Candidatus Koribacter versatilis Ellin345



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008009  Acid345_4356  cold-shock DNA-binding protein family protein  100 
 
 
66 aa  134  3.0000000000000003e-31  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.184389 
 
 
-
 
NC_008009  Acid345_4519  cold-shock DNA-binding protein family protein  87.3 
 
 
66 aa  117  6e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1894  cold-shock DNA-binding protein family protein  78.79 
 
 
66 aa  112  1.0000000000000001e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.00218073  hitchhiker  0.000840233 
 
 
-
 
NC_009483  Gura_4019  cold-shock DNA-binding domain-containing protein  69.7 
 
 
66 aa  103  1e-21  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.000000000020604  n/a   
 
 
-
 
NC_009513  Lreu_1505  cold-shock DNA-binding protein family protein  74.6 
 
 
66 aa  101  3e-21  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.248091  n/a   
 
 
-
 
NC_011071  Smal_2649  cold-shock DNA-binding domain protein  72.31 
 
 
69 aa  101  4e-21  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.139093  normal  0.222327 
 
 
-
 
NC_007517  Gmet_1266  cold-shock DNA-binding protein family protein  70.31 
 
 
66 aa  100  8e-21  Geobacter metallireducens GS-15  Bacteria  hitchhiker  2.7573e-18  decreased coverage  0.00000000000100442 
 
 
-
 
NC_008789  Hhal_1110  cold-shock DNA-binding domain-containing protein  69.23 
 
 
69 aa  99.4  1e-20  Halorhodospira halophila SL1  Bacteria  normal  0.0603017  n/a   
 
 
-
 
NC_008009  Acid345_4183  cold-shock DNA-binding protein family protein  70.97 
 
 
67 aa  99  2e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0862888  normal  0.391924 
 
 
-
 
NC_009524  PsycPRwf_0769  cold-shock DNA-binding domain-containing protein  70.77 
 
 
71 aa  98.2  3e-20  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.0000000056179  normal 
 
 
-
 
NC_007517  Gmet_0340  cold-shock DNA-binding protein family protein  69.7 
 
 
66 aa  98.6  3e-20  Geobacter metallireducens GS-15  Bacteria  unclonable  3.6796e-20  unclonable  6.2466300000000005e-24 
 
 
 
NC_010814  Glov_3186  cold-shock DNA-binding domain protein  68.25 
 
 
67 aa  98.6  3e-20  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000014796  n/a   
 
 
-
 
NC_008340  Mlg_2536  cold-shock DNA-binding protein family protein  69.23 
 
 
69 aa  98.2  3e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.532819  normal  0.0603654 
 
 
-
 
NC_012918  GM21_2005  cold-shock DNA-binding domain protein  69.84 
 
 
66 aa  97.8  4e-20  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1727900000000003e-24 
 
 
-
 
NC_010814  Glov_2627  cold-shock DNA-binding domain protein  73.02 
 
 
66 aa  97.8  4e-20  Geobacter lovleyi SZ  Bacteria  normal  0.0368791  n/a   
 
 
-
 
NC_011146  Gbem_2222  cold-shock DNA-binding domain protein  69.84 
 
 
66 aa  97.8  4e-20  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000977172  n/a   
 
 
-
 
NC_009483  Gura_0958  cold-shock DNA-binding domain-containing protein  68.18 
 
 
68 aa  97.8  5e-20  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000177063  n/a   
 
 
-
 
NC_008609  Ppro_3308  cold-shock DNA-binding domain-containing protein  69.84 
 
 
66 aa  97.4  6e-20  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000000515158  n/a   
 
 
-
 
NC_009439  Pmen_1407  cold-shock DNA-binding protein family protein  69.84 
 
 
69 aa  97.4  6e-20  Pseudomonas mendocina ymp  Bacteria  normal  0.0231172  normal  0.970454 
 
 
-
 
NC_012918  GM21_1502  cold-shock DNA-binding domain protein  66.67 
 
 
68 aa  97.1  7e-20  Geobacter sp. M21  Bacteria  n/a    normal  0.683183 
 
 
-
 
NC_011146  Gbem_2739  cold-shock DNA-binding domain protein  68.75 
 
 
68 aa  97.1  8e-20  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00000080188  n/a   
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  96.7  9e-20  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_009483  Gura_3711  cold-shock DNA-binding domain-containing protein  66.67 
 
 
66 aa  96.7  9e-20  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000509741  n/a   
 
 
-
 
NC_002939  GSU1905  cold shock domain-contain protein  70.31 
 
 
66 aa  96.3  1e-19  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00000974395  n/a   
 
 
-
 
NC_011146  Gbem_3185  cold-shock DNA-binding domain protein  68.25 
 
 
66 aa  96.3  1e-19  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000997397  n/a   
 
 
-
 
NC_007204  Psyc_0942  cold-shock DNA-binding protein family protein  67.69 
 
 
71 aa  96.7  1e-19  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2891  cold-shock DNA-binding domain protein  66.67 
 
 
66 aa  96.3  1e-19  Geobacter sp. M21  Bacteria  n/a    hitchhiker  6.87323e-28 
 
 
-
 
NC_012918  GM21_1077  cold-shock DNA-binding domain protein  68.25 
 
 
66 aa  96.3  1e-19  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.27833e-32 
 
 
-
 
NC_009675  Anae109_0273  cold-shock DNA-binding domain-containing protein  70.77 
 
 
67 aa  96.3  1e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.355642 
 
 
-
 
NC_007498  Pcar_2806  cold shock proteins  70.31 
 
 
85 aa  96.3  1e-19  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  5.72104e-21  n/a   
 
 
-
 
NC_007969  Pcryo_1475  cold-shock DNA-binding domain-containing protein  67.69 
 
 
71 aa  96.7  1e-19  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0207  cold-shock domain-contain protein  69.84 
 
 
66 aa  95.9  2e-19  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.0000092661  n/a   
 
 
-
 
NC_011145  AnaeK_2630  cold-shock DNA-binding domain protein  67.19 
 
 
66 aa  95.9  2e-19  Anaeromyxobacter sp. K  Bacteria  normal  0.681724  n/a   
 
 
-
 
NC_009656  PSPA7_1855  cold acclimation protein B  67.69 
 
 
69 aa  95.5  2e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0386681  n/a   
 
 
-
 
NC_004578  PSPTO_4145  cold shock protein CapB  68.25 
 
 
69 aa  95.5  2e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3884  cold-shock protein, DNA-binding  68.25 
 
 
69 aa  95.5  2e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.218294  normal  0.489383 
 
 
-
 
NC_007404  Tbd_0679  cold-shock DNA-binding protein family protein  67.16 
 
 
68 aa  95.9  2e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.233328  normal  0.774201 
 
 
-
 
NC_011146  Gbem_1391  cold-shock DNA-binding domain protein  65.15 
 
 
66 aa  95.5  2e-19  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000857842  n/a   
 
 
-
 
NC_007492  Pfl01_1201  cold-shock DNA-binding protein family protein  68.25 
 
 
69 aa  95.5  2e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.227908 
 
 
-
 
NC_010717  PXO_01731  hypothetical protein  67.16 
 
 
68 aa  95.5  2e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_21760  cold acclimation protein B  67.69 
 
 
69 aa  95.5  2e-19  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.342335  normal  0.456476 
 
 
-
 
NC_007760  Adeh_1235  cold-shock DNA-binding protein family protein  67.19 
 
 
66 aa  95.9  2e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2724  cold-shock DNA-binding domain protein  67.19 
 
 
66 aa  95.9  2e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.720009  n/a   
 
 
-
 
NC_010322  PputGB1_4313  cold-shock DNA-binding domain-containing protein  64.62 
 
 
69 aa  95.1  3e-19  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_4020  cold-shock DNA-binding domain-containing protein  66.67 
 
 
66 aa  95.1  3e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000184454  n/a   
 
 
-
 
NC_010717  PXO_04812  hypothetical protein  70.49 
 
 
61 aa  95.1  3e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1128  cold-shock DNA-binding domain-containing protein  64.62 
 
 
69 aa  95.1  3e-19  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_3292  cold-shock DNA-binding domain protein  70.77 
 
 
67 aa  95.1  3e-19  Anaeromyxobacter sp. K  Bacteria  hitchhiker  0.0070619  n/a   
 
 
-
 
NC_014210  Ndas_1879  cold-shock DNA-binding domain protein  69.35 
 
 
70 aa  94.7  4e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.753141 
 
 
-
 
NC_011891  A2cp1_3366  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  94.7  4e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  94.7  4e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  94.7  4e-19  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3009  cold-shock DNA-binding domain protein  68.25 
 
 
66 aa  94.7  4e-19  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000000338094  n/a   
 
 
-
 
NC_009675  Anae109_2532  cold-shock DNA-binding domain-containing protein  65.62 
 
 
65 aa  94.7  4e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.19716  normal  0.287944 
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  94.7  4e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4380  cold-shock DNA-binding domain-containing protein  65.15 
 
 
66 aa  94.4  5e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000149248  n/a   
 
 
-
 
NC_013947  Snas_6113  cold-shock DNA-binding domain-containing protein  66.67 
 
 
66 aa  94.4  5e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0191  cold-shock DNA-binding domain protein  65.15 
 
 
66 aa  94  6e-19  Geobacter sp. M21  Bacteria  n/a    unclonable  8.97537e-36 
 
 
-
 
NC_012560  Avin_17950  Cold-shock DNA-binding domain-containing protein  68.25 
 
 
69 aa  94  6e-19  Azotobacter vinelandii DJ  Bacteria  normal  0.140008  n/a   
 
 
-
 
NC_002939  GSU0191  cold-shock domain-contain protein  66.67 
 
 
66 aa  94  7e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0581  cold-shock domain-contain protein  66.67 
 
 
66 aa  94  7e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_39180  Cold-shock-like protein  70.97 
 
 
69 aa  94  7e-19  Azotobacter vinelandii DJ  Bacteria  normal  0.197755  n/a   
 
 
-
 
NC_007517  Gmet_0237  cold-shock DNA-binding protein family protein  66.67 
 
 
66 aa  94  7e-19  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000000692047  hitchhiker  0.0000000000000296416 
 
 
-
 
NC_011071  Smal_2965  cold-shock DNA-binding domain protein  67.19 
 
 
68 aa  93.6  7e-19  Stenotrophomonas maltophilia R551-3  Bacteria  normal  hitchhiker  0.0000138264 
 
 
-
 
NC_011146  Gbem_0208  cold-shock DNA-binding domain protein  65.15 
 
 
66 aa  94  7e-19  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000807689  n/a   
 
 
-
 
NC_008531  LEUM_1878  cold-shock DNA-binding protein family protein  66.67 
 
 
66 aa  93.6  8e-19  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0567  cold-shock DNA-binding domain-containing protein  67.69 
 
 
68 aa  93.6  9e-19  Burkholderia phymatum STM815  Bacteria  unclonable  0.0000000000101913  hitchhiker  0.000143899 
 
 
-
 
NC_002947  PP_1099  cold-shock domain-contain protein  63.08 
 
 
69 aa  92.8  1e-18  Pseudomonas putida KT2440  Bacteria  normal  0.0660556  normal 
 
 
-
 
NC_008463  PA14_49410  cold-shock protein  69.23 
 
 
69 aa  93.2  1e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000191939  normal  0.274128 
 
 
-
 
NC_009656  PSPA7_4220  cold-shock protein  69.23 
 
 
69 aa  93.2  1e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4042  cold-shock DNA-binding domain-containing protein  67.69 
 
 
67 aa  93.2  1e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1139  cold-shock DNA-binding domain-containing protein  63.08 
 
 
69 aa  92.8  1e-18  Pseudomonas putida F1  Bacteria  normal  0.159877  normal  0.955199 
 
 
-
 
NC_009656  PSPA7_0559  putative cold-shock protein  64.62 
 
 
69 aa  93.2  1e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_05960  putative cold-shock protein  64.62 
 
 
69 aa  93.2  1e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.979044  normal  0.17642 
 
 
-
 
NC_011145  AnaeK_1045  cold-shock DNA-binding domain protein  62.69 
 
 
67 aa  92.4  2e-18  Anaeromyxobacter sp. K  Bacteria  normal  0.396466  n/a   
 
 
-
 
NC_010681  Bphyt_3167  cold-shock DNA-binding domain protein  66.15 
 
 
68 aa  92.4  2e-18  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000000493488  hitchhiker  0.00220171 
 
 
-
 
NC_013131  Caci_1466  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  92.4  2e-18  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00122582  normal 
 
 
-
 
NC_011772  BCG9842_B1369  hypothetical protein  67.19 
 
 
66 aa  92.4  2e-18  Bacillus cereus G9842  Bacteria  normal  normal  0.309276 
 
 
-
 
NC_007760  Adeh_0988  cold-shock DNA-binding protein family protein  62.69 
 
 
67 aa  92.4  2e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3176  cold-shock DNA-binding protein family protein  67.69 
 
 
67 aa  92.8  2e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0798  cold-shock DNA-binding protein family protein  66.15 
 
 
68 aa  92.4  2e-18  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000106482  normal 
 
 
-
 
NC_010322  PputGB1_0990  cold-shock DNA-binding domain-containing protein  64.62 
 
 
70 aa  92  2e-18  Pseudomonas putida GB-1  Bacteria  normal  0.0731178  normal 
 
 
-
 
NC_011891  A2cp1_1049  cold-shock DNA-binding domain protein  62.69 
 
 
67 aa  92.4  2e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0985  cold-shock domain-contain protein  63.08 
 
 
165 aa  92  3e-18  Pseudomonas putida KT2440  Bacteria  normal  0.693181  normal 
 
 
-
 
NC_011145  AnaeK_2588  cold-shock DNA-binding domain protein  69.23 
 
 
67 aa  92  3e-18  Anaeromyxobacter sp. K  Bacteria  normal  0.110334  n/a   
 
 
-
 
NC_007498  Pcar_0201  cold shock protein  66.67 
 
 
66 aa  92  3e-18  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000435671  n/a   
 
 
-
 
NC_011901  Tgr7_0492  putative cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  92  3e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1274  cold-shock DNA-binding protein family protein  69.23 
 
 
67 aa  92  3e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4233  cold-shock DNA-binding domain-containing protein  63.08 
 
 
70 aa  92  3e-18  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2681  cold-shock DNA-binding domain protein  69.23 
 
 
67 aa  92  3e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0114675  n/a   
 
 
-
 
NC_008609  Ppro_0557  cold-shock DNA-binding domain-containing protein  63.49 
 
 
67 aa  91.3  4e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0146749  n/a   
 
 
-
 
NC_011071  Smal_1625  cold-shock DNA-binding domain protein  64.62 
 
 
69 aa  91.3  4e-18  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.778402  normal  0.204275 
 
 
-
 
NC_008709  Ping_1953  cold-shock DNA-binding domain-containing protein  66.13 
 
 
69 aa  90.9  5e-18  Psychromonas ingrahamii 37  Bacteria  normal  0.0846226  normal  0.0196408 
 
 
-
 
NC_008463  PA14_51840  cold-shock protein  66.13 
 
 
204 aa  90.9  5e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.192967  hitchhiker  0.0041484 
 
 
-
 
NC_009675  Anae109_4117  cold-shock DNA-binding domain-containing protein  66.15 
 
 
67 aa  90.9  5e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.327381  normal  0.21845 
 
 
-
 
NC_011662  Tmz1t_1374  cold-shock DNA-binding domain protein  61.54 
 
 
67 aa  90.9  6e-18  Thauera sp. MZ1T  Bacteria  normal  0.287556  n/a   
 
 
-
 
NC_012857  Rpic12D_4386  cold-shock DNA-binding domain protein  67.19 
 
 
67 aa  90.9  6e-18  Ralstonia pickettii 12D  Bacteria  normal  normal  0.490734 
 
 
-
 
NC_010678  Rpic_4276  cold-shock DNA-binding domain protein  67.19 
 
 
67 aa  90.9  6e-18  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0226  cold-shock DNA-binding protein family protein  65.57 
 
 
65 aa  90.5  6e-18  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000000000017804  normal 
 
 
-
 
NC_009656  PSPA7_4547  cold-shock protein  66.13 
 
 
203 aa  90.5  6e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
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