56 homologs were found in PanDaTox collection
for query gene Nham_3617 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_3617  succinate dehydrogenase, cytochrome b subunit  100 
 
 
133 aa  268  2e-71  Nitrobacter hamburgensis X14  Bacteria  normal  0.0610127  n/a   
 
 
-
 
NC_007406  Nwi_2799  succinate dehydrogenase, cytochrome b subunit  91.6 
 
 
135 aa  241  3e-63  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0326  succinate dehydrogenase, cytochrome b subunit  68.25 
 
 
140 aa  186  1e-46  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0217  succinate dehydrogenase, hydrophobic membrane anchor protein  69.29 
 
 
137 aa  186  1e-46  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.294581  n/a   
 
 
-
 
NC_007925  RPC_0071  succinate dehydrogenase, cytochrome b subunit  69.05 
 
 
140 aa  186  1e-46  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0229  succinate dehydrogenase subunit D  79.03 
 
 
124 aa  184  3e-46  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0481798  normal 
 
 
-
 
NC_007958  RPD_0480  succinate dehydrogenase, cytochrome b subunit  67.2 
 
 
140 aa  162  1.0000000000000001e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.74591 
 
 
-
 
NC_009720  Xaut_1966  succinate dehydrogenase hydrophobic membrane anchor  46.15 
 
 
135 aa  125  3e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.192092 
 
 
-
 
NC_009505  BOV_1831  succinate dehydrogenase, hydrophobic membrane anchor protein  48 
 
 
131 aa  123  9e-28  Brucella ovis ATCC 25840  Bacteria  normal  0.405977  n/a   
 
 
-
 
NC_004310  BR1903  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  48 
 
 
131 aa  122  1e-27  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2750  succinate dehydrogenase, hydrophobic membrane anchor protein  49.59 
 
 
130 aa  120  6e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0952  succinate dehydrogenase hydrophobic membrane anchor  46.4 
 
 
131 aa  117  3.9999999999999996e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.676521  n/a   
 
 
-
 
NC_011369  Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein  47.54 
 
 
126 aa  116  7.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7245  succinate dehydrogenase, hydrophobic membrane anchor protein  41.27 
 
 
137 aa  116  7.999999999999999e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396127  n/a   
 
 
-
 
NC_012850  Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein  46.72 
 
 
126 aa  115  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.705456  normal  0.476216 
 
 
-
 
NC_009636  Smed_2958  succinate dehydrogenase hydrophobic membrane anchor  48.36 
 
 
126 aa  114  3e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.0363094  normal 
 
 
-
 
NC_010511  M446_6039  succinate dehydrogenase, hydrophobic membrane anchor protein  40.65 
 
 
137 aa  114  5e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0685536 
 
 
-
 
NC_011757  Mchl_3893  succinate dehydrogenase, hydrophobic membrane anchor protein  43.55 
 
 
139 aa  113  1.0000000000000001e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.20647  normal 
 
 
-
 
NC_010725  Mpop_4277  succinate dehydrogenase, hydrophobic membrane anchor protein  43.55 
 
 
139 aa  113  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  0.692368  normal  0.965438 
 
 
-
 
NC_010172  Mext_3601  succinate dehydrogenase, hydrophobic membrane anchor protein  43.55 
 
 
139 aa  113  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  0.0736554  normal 
 
 
-
 
NC_011989  Avi_4136  succinate dehydrogenase hydrophobic membrane anchor  45.08 
 
 
126 aa  108  3e-23  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3245  succinate dehydrogenase subunit D  45.16 
 
 
127 aa  107  7.000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1434  succinate dehydrogenase hydrophobic membrane anchor  48 
 
 
141 aa  104  5e-22  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3564  succinate dehydrogenase, hydrophobic membrane anchor protein  42.15 
 
 
129 aa  100  9e-21  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008347  Mmar10_2847  succinate dehydrogenase subunit D  43.33 
 
 
123 aa  90.5  7e-18  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00603  succinate dehydrogenase, hydrophobic membrane anchor protein  39.34 
 
 
128 aa  89.7  1e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_3031  succinate dehydrogenase, cytochrome b subunit  36.44 
 
 
134 aa  90.1  1e-17  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_0379  succinate dehydrogenase hydrophobic membrane anchor subunit  40.16 
 
 
127 aa  89  2e-17  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1333  succinate dehydrogenase subunit D  35.94 
 
 
126 aa  89  2e-17  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.934114 
 
 
-
 
NC_009511  Swit_1311  succinate dehydrogenase subunit D  35.54 
 
 
129 aa  88.2  3e-17  Sphingomonas wittichii RW1  Bacteria  normal  0.0693068  normal 
 
 
-
 
NC_010577  XfasM23_0343  succinate dehydrogenase, hydrophobic membrane anchor protein  39.34 
 
 
127 aa  87.4  6e-17  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1549  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  37.7 
 
 
126 aa  87.4  6e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  0.591464  n/a   
 
 
-
 
NC_008783  BARBAKC583_0089  succinate dehydrogenase, hydrophobic membrane anchor protein  34.92 
 
 
128 aa  86.3  1e-16  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0458  succinate dehydrogenase, hydrophobic membrane anchor protein  44 
 
 
139 aa  86.3  1e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.152846  normal 
 
 
-
 
NC_011071  Smal_1536  succinate dehydrogenase, hydrophobic membrane anchor protein  36.8 
 
 
128 aa  80.9  0.000000000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5889  succinate dehydrogenase, hydrophobic membrane anchor protein  41.53 
 
 
127 aa  80.9  0.000000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5819  succinate dehydrogenase, hydrophobic membrane anchor protein  36.67 
 
 
127 aa  77.8  0.00000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1880  succinate dehydrogenase, cytochrome b subunit  35.54 
 
 
125 aa  72  0.000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.519683  n/a   
 
 
-
 
NC_007643  Rru_A1203  succinate dehydrogenase subunit D  35.71 
 
 
128 aa  72.4  0.000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.767553  n/a   
 
 
-
 
NC_011365  Gdia_2108  succinate dehydrogenase, hydrophobic membrane anchor protein  33.06 
 
 
140 aa  71.6  0.000000000003  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1745  succinate dehydrogenase subunit D  33.05 
 
 
127 aa  68.2  0.00000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.287201  n/a   
 
 
-
 
NC_007802  Jann_0810  succinate dehydrogenase subunit D  31.93 
 
 
123 aa  65.9  0.0000000002  Jannaschia sp. CCS1  Bacteria  normal  normal  0.851404 
 
 
-
 
NC_008789  Hhal_0045  succinate dehydrogenase, cytochrome b subunit  29.6 
 
 
127 aa  65.5  0.0000000003  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4839  succinate dehydrogenase, hydrophobic membrane anchor protein  33.33 
 
 
135 aa  59.7  0.00000001  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0568  putative succinate dehydrogenase, hydrophobic membrane anchor protein  30.58 
 
 
129 aa  58.2  0.00000004  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0825505 
 
 
-
 
NC_008687  Pden_3020  succinate dehydrogenase, cytochrome b subunit  30.53 
 
 
127 aa  57.8  0.00000006  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.915417 
 
 
-
 
NC_007614  Nmul_A0862  succinate dehydrogenase, cytochrome b subunit  30.34 
 
 
120 aa  49.3  0.00002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0087  hypothetical protein  29.41 
 
 
123 aa  46.2  0.0002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.5065  normal 
 
 
-
 
NC_009049  Rsph17029_2635  putative succinate dehydrogenase, hydrophobic membrane anchor protein  28.43 
 
 
123 aa  45.4  0.0002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0975  succinate dehydrogenase subunit D  28.43 
 
 
123 aa  45.4  0.0002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2866  hypothetical protein  27.73 
 
 
123 aa  44.7  0.0004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_002978  WD1222  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  21.9 
 
 
118 aa  43.1  0.001  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1800  succinate dehydrogenase, cytochrome b subunit  33.33 
 
 
121 aa  42  0.003  Rhodoferax ferrireducens T118  Bacteria  normal  0.211028  n/a   
 
 
-
 
NC_007347  Reut_A2324  succinate dehydrogenase subunit D  29.76 
 
 
121 aa  42  0.003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3601  succinate dehydrogenase subunit D  28.7 
 
 
121 aa  40.8  0.006  Polaromonas sp. JS666  Bacteria  normal  normal  0.300768 
 
 
-
 
NC_008043  TM1040_3526  succinate dehydrogenase subunit D  27.88 
 
 
123 aa  40.8  0.006  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
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