51 homologs were found in PanDaTox collection
for query gene Pden_3020 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008687  Pden_3020  succinate dehydrogenase, cytochrome b subunit  100 
 
 		 127 aa  240  3.9999999999999997e-63  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.915417 
 
 
-
 
NC_002977  MCA1549  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  43.22 
 
 		 126 aa  99.4  2e-20  Methylococcus capsulatus str. Bath  Bacteria  normal  0.591464  n/a   
 
 
-
 
NC_008789  Hhal_0045  succinate dehydrogenase, cytochrome b subunit  42.98 
 
 		 127 aa  95.5  2e-19  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011365  Gdia_2108  succinate dehydrogenase, hydrophobic membrane anchor protein  37.93 
 
 		 140 aa  88.6  3e-17  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_1333  succinate dehydrogenase subunit D  40.8 
 
 		 126 aa  86.3  1e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.934114 
 
 
-
 
NC_009511  Swit_1311  succinate dehydrogenase subunit D  40 
 
 		 129 aa  83.6  8e-16  Sphingomonas wittichii RW1  Bacteria  normal  0.0693068  normal  1 
 
 
-
 
NC_004310  BR1903  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  38.52 
 
 		 131 aa  82.8  0.000000000000001  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_1831  succinate dehydrogenase, hydrophobic membrane anchor protein  38.52 
 
 		 131 aa  83.6  0.000000000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.405977  n/a   
 
 
-
 
NC_009667  Oant_0952  succinate dehydrogenase hydrophobic membrane anchor  37.7 
 
 		 131 aa  82  0.000000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.676521  n/a   
 
 
-
 
NC_009636  Smed_2958  succinate dehydrogenase hydrophobic membrane anchor  39.84 
 
 		 126 aa  81.3  0.000000000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.0363094  normal  1 
 
 
-
 
NC_007643  Rru_A1203  succinate dehydrogenase subunit D  38.58 
 
 		 128 aa  77.4  0.00000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.767553  n/a   
 
 
-
 
NC_007794  Saro_1745  succinate dehydrogenase subunit D  37.39 
 
 		 127 aa  76.6  0.0000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.287201  n/a   
 
 
-
 
NC_010511  M446_6039  succinate dehydrogenase, hydrophobic membrane anchor protein  35.54 
 
 		 137 aa  75.9  0.0000000000002  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0685536 
 
 
-
 
NC_012850  Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein  40.23 
 
 		 126 aa  75.1  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.705456  normal  0.476216 
 
 
-
 
NC_010717  PXO_00603  succinate dehydrogenase, hydrophobic membrane anchor protein  42.74 
 
 		 128 aa  75.5  0.0000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein  40.23 
 
 		 126 aa  74.7  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010513  Xfasm12_0379  succinate dehydrogenase hydrophobic membrane anchor subunit  43.55 
 
 		 127 aa  74.3  0.0000000000006  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_0343  succinate dehydrogenase, hydrophobic membrane anchor protein  42.74 
 
 		 127 aa  73.2  0.000000000001  Xylella fastidiosa M23  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_7245  succinate dehydrogenase, hydrophobic membrane anchor protein  34.92 
 
 		 137 aa  73.2  0.000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396127  n/a   
 
 
-
 
NC_008048  Sala_3031  succinate dehydrogenase, cytochrome b subunit  37.39 
 
 		 134 aa  72.8  0.000000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_4136  succinate dehydrogenase hydrophobic membrane anchor  34.17 
 
 		 126 aa  71.6  0.000000000004  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_3245  succinate dehydrogenase subunit D  35.83 
 
 		 127 aa  69.7  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_1536  succinate dehydrogenase, hydrophobic membrane anchor protein  39.83 
 
 		 128 aa  68.2  0.00000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_3601  succinate dehydrogenase, hydrophobic membrane anchor protein  39.58 
 
 		 139 aa  67  0.00000000009  Methylobacterium extorquens PA1  Bacteria  normal  0.0736554  normal  1 
 
 
-
 
NC_011757  Mchl_3893  succinate dehydrogenase, hydrophobic membrane anchor protein  39.58 
 
 		 139 aa  66.6  0.0000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.20647  normal  1 
 
 
-
 
NC_010725  Mpop_4277  succinate dehydrogenase, hydrophobic membrane anchor protein  35.34 
 
 		 139 aa  65.9  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  0.692368  normal  0.965438 
 
 
-
 
NC_008783  BARBAKC583_0089  succinate dehydrogenase, hydrophobic membrane anchor protein  31.9 
 
 		 128 aa  65.1  0.0000000003  Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_009484  Acry_1880  succinate dehydrogenase, cytochrome b subunit  42.24 
 
 		 125 aa  61.6  0.000000004  Acidiphilium cryptum JF-5  Bacteria  normal  0.519683  n/a   
 
 
-
 
NC_007802  Jann_0810  succinate dehydrogenase subunit D  30.58 
 
 		 123 aa  60.5  0.000000008  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.851404 
 
 
-
 
NC_010505  Mrad2831_0458  succinate dehydrogenase, hydrophobic membrane anchor protein  42.11 
 
 		 139 aa  60.5  0.000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.152846  normal  1 
 
 
-
 
NC_007778  RPB_0326  succinate dehydrogenase, cytochrome b subunit  34.09 
 
 		 140 aa  59.3  0.00000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007799  ECH_0917  putative succinate dehydrogenase, hydrophobic membrane anchor protein  38.55 
 
 		 118 aa  59.3  0.00000002  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  1  n/a   
 
 
-
 
NC_010581  Bind_2750  succinate dehydrogenase, hydrophobic membrane anchor protein  35.96 
 
 		 130 aa  58.9  0.00000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_4839  succinate dehydrogenase, hydrophobic membrane anchor protein  36.8 
 
 		 135 aa  59.3  0.00000002  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008347  Mmar10_2847  succinate dehydrogenase subunit D  40.45 
 
 		 123 aa  58.2  0.00000003  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_2866  hypothetical protein  31.58 
 
 		 123 aa  57.8  0.00000006  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_0217  succinate dehydrogenase, hydrophobic membrane anchor protein  31.82 
 
 		 137 aa  57.8  0.00000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.294581  n/a   
 
 
-
 
NC_007964  Nham_3617  succinate dehydrogenase, cytochrome b subunit  30.53 
 
 		 133 aa  57.4  0.00000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.0610127  n/a   
 
 
-
 
NC_007958  RPD_0480  succinate dehydrogenase, cytochrome b subunit  34.09 
 
 		 140 aa  54.7  0.0000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.74591 
 
 
-
 
NC_008686  Pden_0568  putative succinate dehydrogenase, hydrophobic membrane anchor protein  31.25 
 
 		 129 aa  54.7  0.0000004  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.0825505 
 
 
-
 
NC_009428  Rsph17025_0087  hypothetical protein  35.56 
 
 		 123 aa  54.3  0.0000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.5065  normal  1 
 
 
-
 
NC_007406  Nwi_2799  succinate dehydrogenase, cytochrome b subunit  29.21 
 
 		 135 aa  53.9  0.0000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_1966  succinate dehydrogenase hydrophobic membrane anchor  38.04 
 
 		 135 aa  53.9  0.0000007  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.192092 
 
 
-
 
NC_007493  RSP_0975  succinate dehydrogenase subunit D  35.56 
 
 		 123 aa  53.9  0.0000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_2635  putative succinate dehydrogenase, hydrophobic membrane anchor protein  35.56 
 
 		 123 aa  53.9  0.0000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002978  WD1222  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  36.14 
 
 		 118 aa  53.1  0.000001  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_0071  succinate dehydrogenase, cytochrome b subunit  27.27 
 
 		 140 aa  53.1  0.000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_1434  succinate dehydrogenase hydrophobic membrane anchor  37.21 
 
 		 141 aa  51.6  0.000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_3564  succinate dehydrogenase, hydrophobic membrane anchor protein  32.48 
 
 		 129 aa  50.8  0.000006  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_009485  BBta_0229  succinate dehydrogenase subunit D  30.09 
 
 		 124 aa  50.1  0.000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0481798  normal  1 
 
 
-
 
NC_007354  Ecaj_0190  succinate dehydrogenase subunit D  28.57 
 
 		 118 aa  45.4  0.0002  Ehrlichia canis str. Jake  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>