50 homologs were found in PanDaTox collection
for query gene Rpal_0217 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011004  Rpal_0217  succinate dehydrogenase, hydrophobic membrane anchor protein  100 
 
 		 137 aa  273  5e-73  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.294581  n/a   
 
 
-
 
NC_007778  RPB_0326  succinate dehydrogenase, cytochrome b subunit  86.13 
 
 		 140 aa  238  2e-62  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_0071  succinate dehydrogenase, cytochrome b subunit  83.21 
 
 		 140 aa  232  1.0000000000000001e-60  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_0480  succinate dehydrogenase, cytochrome b subunit  83.94 
 
 		 140 aa  211  2.9999999999999995e-54  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.74591 
 
 
-
 
NC_007964  Nham_3617  succinate dehydrogenase, cytochrome b subunit  69.29 
 
 		 133 aa  186  1e-46  Nitrobacter hamburgensis X14  Bacteria  normal  0.0610127  n/a   
 
 
-
 
NC_007406  Nwi_2799  succinate dehydrogenase, cytochrome b subunit  68.8 
 
 		 135 aa  182  1.0000000000000001e-45  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0229  succinate dehydrogenase subunit D  70.97 
 
 		 124 aa  161  3e-39  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0481798  normal  1 
 
 
-
 
NC_010172  Mext_3601  succinate dehydrogenase, hydrophobic membrane anchor protein  41.91 
 
 		 139 aa  125  3e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.0736554  normal  1 
 
 
-
 
NC_010725  Mpop_4277  succinate dehydrogenase, hydrophobic membrane anchor protein  41.91 
 
 		 139 aa  124  5e-28  Methylobacterium populi BJ001  Bacteria  normal  0.692368  normal  0.965438 
 
 
-
 
NC_011757  Mchl_3893  succinate dehydrogenase, hydrophobic membrane anchor protein  41.18 
 
 		 139 aa  122  1e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.20647  normal  1 
 
 
-
 
NC_009720  Xaut_1966  succinate dehydrogenase hydrophobic membrane anchor  45.11 
 
 		 135 aa  122  2e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.192092 
 
 
-
 
NC_009505  BOV_1831  succinate dehydrogenase, hydrophobic membrane anchor protein  44.8 
 
 		 131 aa  120  5e-27  Brucella ovis ATCC 25840  Bacteria  normal  0.405977  n/a   
 
 
-
 
NC_004310  BR1903  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  44.8 
 
 		 131 aa  120  8e-27  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_0952  succinate dehydrogenase hydrophobic membrane anchor  42.4 
 
 		 131 aa  113  6.9999999999999995e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.676521  n/a   
 
 
-
 
NC_012850  Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein  45.9 
 
 		 126 aa  110  4.0000000000000004e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.705456  normal  0.476216 
 
 
-
 
NC_010581  Bind_2750  succinate dehydrogenase, hydrophobic membrane anchor protein  40.94 
 
 		 130 aa  110  6e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_2958  succinate dehydrogenase hydrophobic membrane anchor  45.08 
 
 		 126 aa  110  8.000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.0363094  normal  1 
 
 
-
 
NC_011369  Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein  45.08 
 
 		 126 aa  108  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_6039  succinate dehydrogenase, hydrophobic membrane anchor protein  36.89 
 
 		 137 aa  107  4.0000000000000004e-23  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0685536 
 
 
-
 
NC_011894  Mnod_7245  succinate dehydrogenase, hydrophobic membrane anchor protein  36.07 
 
 		 137 aa  107  4.0000000000000004e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396127  n/a   
 
 
-
 
NC_011989  Avi_4136  succinate dehydrogenase hydrophobic membrane anchor  42.62 
 
 		 126 aa  103  7e-22  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_1434  succinate dehydrogenase hydrophobic membrane anchor  44.8 
 
 		 141 aa  103  8e-22  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_3564  succinate dehydrogenase, hydrophobic membrane anchor protein  38.93 
 
 		 129 aa  92  3e-18  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_008254  Meso_3245  succinate dehydrogenase subunit D  37.9 
 
 		 127 aa  91.3  4e-18  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008347  Mmar10_2847  succinate dehydrogenase subunit D  36.59 
 
 		 123 aa  85.1  3e-16  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_1311  succinate dehydrogenase subunit D  35.54 
 
 		 129 aa  85.1  3e-16  Sphingomonas wittichii RW1  Bacteria  normal  0.0693068  normal  1 
 
 
-
 
NC_012853  Rleg_5819  succinate dehydrogenase, hydrophobic membrane anchor protein  38.33 
 
 		 127 aa  85.1  3e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008783  BARBAKC583_0089  succinate dehydrogenase, hydrophobic membrane anchor protein  33.6 
 
 		 128 aa  80.5  0.000000000000006  Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_012853  Rleg_5889  succinate dehydrogenase, hydrophobic membrane anchor protein  38.02 
 
 		 127 aa  79  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002977  MCA1549  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  34.71 
 
 		 126 aa  78.6  0.00000000000003  Methylococcus capsulatus str. Bath  Bacteria  normal  0.591464  n/a   
 
 
-
 
NC_008340  Mlg_1333  succinate dehydrogenase subunit D  33.06 
 
 		 126 aa  77.8  0.00000000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.934114 
 
 
-
 
NC_010717  PXO_00603  succinate dehydrogenase, hydrophobic membrane anchor protein  34.4 
 
 		 128 aa  75.5  0.0000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0379  succinate dehydrogenase hydrophobic membrane anchor subunit  34.4 
 
 		 127 aa  75.1  0.0000000000003  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_0343  succinate dehydrogenase, hydrophobic membrane anchor protein  34.4 
 
 		 127 aa  75.1  0.0000000000003  Xylella fastidiosa M23  Bacteria  normal  1  n/a   
 
 
-
 
NC_008048  Sala_3031  succinate dehydrogenase, cytochrome b subunit  32.77 
 
 		 134 aa  75.1  0.0000000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_0458  succinate dehydrogenase, hydrophobic membrane anchor protein  36.61 
 
 		 139 aa  74.3  0.0000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.152846  normal  1 
 
 
-
 
NC_011071  Smal_1536  succinate dehydrogenase, hydrophobic membrane anchor protein  35.71 
 
 		 128 aa  72.4  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009484  Acry_1880  succinate dehydrogenase, cytochrome b subunit  31.4 
 
 		 125 aa  67  0.00000000009  Acidiphilium cryptum JF-5  Bacteria  normal  0.519683  n/a   
 
 
-
 
NC_007643  Rru_A1203  succinate dehydrogenase subunit D  30.16 
 
 		 128 aa  64.7  0.0000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.767553  n/a   
 
 
-
 
NC_011365  Gdia_2108  succinate dehydrogenase, hydrophobic membrane anchor protein  28.69 
 
 		 140 aa  62.4  0.000000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008789  Hhal_0045  succinate dehydrogenase, cytochrome b subunit  31.15 
 
 		 127 aa  62  0.000000003  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010338  Caul_4839  succinate dehydrogenase, hydrophobic membrane anchor protein  31.25 
 
 		 135 aa  61.2  0.000000004  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_1745  succinate dehydrogenase subunit D  29.75 
 
 		 127 aa  59.7  0.00000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.287201  n/a   
 
 
-
 
NC_008687  Pden_3020  succinate dehydrogenase, cytochrome b subunit  31.82 
 
 		 127 aa  58.2  0.00000004  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.915417 
 
 
-
 
NC_007802  Jann_0810  succinate dehydrogenase subunit D  28.7 
 
 		 123 aa  58.2  0.00000004  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.851404 
 
 
-
 
NC_008686  Pden_0568  putative succinate dehydrogenase, hydrophobic membrane anchor protein  29.75 
 
 		 129 aa  56.2  0.0000001  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.0825505 
 
 
-
 
NC_008043  TM1040_3526  succinate dehydrogenase subunit D  27.36 
 
 		 123 aa  43.1  0.001  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_2866  hypothetical protein  25.45 
 
 		 123 aa  43.1  0.001  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009524  PsycPRwf_0262  succinate dehydrogenase, hydrophobic membrane anchor  34.83 
 
 		 127 aa  41.2  0.004  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  0.801835 
 
 
-
 
NC_002978  WD1222  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  24.07 
 
 		 118 aa  40.8  0.006  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>