49 homologs were found in PanDaTox collection
for query gene RPD_0480 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007958  RPD_0480  succinate dehydrogenase, cytochrome b subunit  100 
 
 		 140 aa  280  4.0000000000000003e-75  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.74591 
 
 
-
 
NC_007778  RPB_0326  succinate dehydrogenase, cytochrome b subunit  92.14 
 
 		 140 aa  261  2e-69  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_0071  succinate dehydrogenase, cytochrome b subunit  86.43 
 
 		 140 aa  252  1.0000000000000001e-66  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_0217  succinate dehydrogenase, hydrophobic membrane anchor protein  83.94 
 
 		 137 aa  235  1e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.294581  n/a   
 
 
-
 
NC_007964  Nham_3617  succinate dehydrogenase, cytochrome b subunit  67.2 
 
 		 133 aa  183  8e-46  Nitrobacter hamburgensis X14  Bacteria  normal  0.0610127  n/a   
 
 
-
 
NC_007406  Nwi_2799  succinate dehydrogenase, cytochrome b subunit  66.93 
 
 		 135 aa  182  2.0000000000000003e-45  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_0229  succinate dehydrogenase subunit D  73.39 
 
 		 124 aa  165  2e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0481798  normal  1 
 
 
-
 
NC_009505  BOV_1831  succinate dehydrogenase, hydrophobic membrane anchor protein  47.58 
 
 		 131 aa  122  2e-27  Brucella ovis ATCC 25840  Bacteria  normal  0.405977  n/a   
 
 
-
 
NC_004310  BR1903  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  47.58 
 
 		 131 aa  121  3e-27  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_4277  succinate dehydrogenase, hydrophobic membrane anchor protein  42.06 
 
 		 139 aa  119  1.9999999999999998e-26  Methylobacterium populi BJ001  Bacteria  normal  0.692368  normal  0.965438 
 
 
-
 
NC_009720  Xaut_1966  succinate dehydrogenase hydrophobic membrane anchor  45.6 
 
 		 135 aa  119  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.192092 
 
 
-
 
NC_010172  Mext_3601  succinate dehydrogenase, hydrophobic membrane anchor protein  40.91 
 
 		 139 aa  117  3.9999999999999996e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.0736554  normal  1 
 
 
-
 
NC_009636  Smed_2958  succinate dehydrogenase hydrophobic membrane anchor  48.36 
 
 		 126 aa  117  4.9999999999999996e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.0363094  normal  1 
 
 
-
 
NC_011757  Mchl_3893  succinate dehydrogenase, hydrophobic membrane anchor protein  41.27 
 
 		 139 aa  117  7e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.20647  normal  1 
 
 
-
 
NC_010581  Bind_2750  succinate dehydrogenase, hydrophobic membrane anchor protein  43.31 
 
 		 130 aa  116  7.999999999999999e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_0952  succinate dehydrogenase hydrophobic membrane anchor  45.16 
 
 		 131 aa  115  3e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.676521  n/a   
 
 
-
 
NC_012850  Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein  45.9 
 
 		 126 aa  110  8.000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.705456  normal  0.476216 
 
 
-
 
NC_011894  Mnod_7245  succinate dehydrogenase, hydrophobic membrane anchor protein  36.89 
 
 		 137 aa  107  5e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396127  n/a   
 
 
-
 
NC_010511  M446_6039  succinate dehydrogenase, hydrophobic membrane anchor protein  37.7 
 
 		 137 aa  107  6e-23  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0685536 
 
 
-
 
NC_011369  Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein  44.26 
 
 		 126 aa  107  7.000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_4136  succinate dehydrogenase hydrophobic membrane anchor  42.62 
 
 		 126 aa  104  4e-22  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_1434  succinate dehydrogenase hydrophobic membrane anchor  41.18 
 
 		 141 aa  102  1e-21  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_3564  succinate dehydrogenase, hydrophobic membrane anchor protein  40.94 
 
 		 129 aa  96.7  9e-20  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_008254  Meso_3245  succinate dehydrogenase subunit D  36.8 
 
 		 127 aa  90.9  5e-18  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012853  Rleg_5819  succinate dehydrogenase, hydrophobic membrane anchor protein  38.33 
 
 		 127 aa  88.2  3e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_1311  succinate dehydrogenase subunit D  36.36 
 
 		 129 aa  86.7  9e-17  Sphingomonas wittichii RW1  Bacteria  normal  0.0693068  normal  1 
 
 
-
 
NC_012853  Rleg_5889  succinate dehydrogenase, hydrophobic membrane anchor protein  38.46 
 
 		 127 aa  84.7  4e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008347  Mmar10_2847  succinate dehydrogenase subunit D  38.21 
 
 		 123 aa  83.6  8e-16  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008783  BARBAKC583_0089  succinate dehydrogenase, hydrophobic membrane anchor protein  34.4 
 
 		 128 aa  80.9  0.000000000000005  Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA1549  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  34.71 
 
 		 126 aa  80.9  0.000000000000006  Methylococcus capsulatus str. Bath  Bacteria  normal  0.591464  n/a   
 
 
-
 
NC_010717  PXO_00603  succinate dehydrogenase, hydrophobic membrane anchor protein  35.25 
 
 		 128 aa  77.4  0.00000000000006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_0458  succinate dehydrogenase, hydrophobic membrane anchor protein  39.13 
 
 		 139 aa  77  0.00000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.152846  normal  1 
 
 
-
 
NC_011071  Smal_1536  succinate dehydrogenase, hydrophobic membrane anchor protein  38.1 
 
 		 128 aa  76.3  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_1333  succinate dehydrogenase subunit D  32.26 
 
 		 126 aa  75.9  0.0000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.934114 
 
 
-
 
NC_010513  Xfasm12_0379  succinate dehydrogenase hydrophobic membrane anchor subunit  36.07 
 
 		 127 aa  75.9  0.0000000000002  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_010577  XfasM23_0343  succinate dehydrogenase, hydrophobic membrane anchor protein  36.07 
 
 		 127 aa  75.9  0.0000000000002  Xylella fastidiosa M23  Bacteria  normal  1  n/a   
 
 
-
 
NC_008048  Sala_3031  succinate dehydrogenase, cytochrome b subunit  33.61 
 
 		 134 aa  75.1  0.0000000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_4839  succinate dehydrogenase, hydrophobic membrane anchor protein  34.88 
 
 		 135 aa  69.7  0.00000000001  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009484  Acry_1880  succinate dehydrogenase, cytochrome b subunit  34.71 
 
 		 125 aa  67.4  0.00000000006  Acidiphilium cryptum JF-5  Bacteria  normal  0.519683  n/a   
 
 
-
 
NC_007643  Rru_A1203  succinate dehydrogenase subunit D  31.75 
 
 		 128 aa  67  0.00000000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.767553  n/a   
 
 
-
 
NC_011365  Gdia_2108  succinate dehydrogenase, hydrophobic membrane anchor protein  31.15 
 
 		 140 aa  66.6  0.0000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008789  Hhal_0045  succinate dehydrogenase, cytochrome b subunit  30.33 
 
 		 127 aa  60.1  0.00000001  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008686  Pden_0568  putative succinate dehydrogenase, hydrophobic membrane anchor protein  30.58 
 
 		 129 aa  58.9  0.00000002  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.0825505 
 
 
-
 
NC_007794  Saro_1745  succinate dehydrogenase subunit D  28.93 
 
 		 127 aa  58.2  0.00000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.287201  n/a   
 
 
-
 
NC_008687  Pden_3020  succinate dehydrogenase, cytochrome b subunit  34.09 
 
 		 127 aa  58.5  0.00000003  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.915417 
 
 
-
 
NC_007802  Jann_0810  succinate dehydrogenase subunit D  26.96 
 
 		 123 aa  56.6  0.0000001  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.851404 
 
 
-
 
NC_008043  TM1040_3526  succinate dehydrogenase subunit D  29.25 
 
 		 123 aa  42  0.003  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009524  PsycPRwf_0262  succinate dehydrogenase, hydrophobic membrane anchor  32.32 
 
 		 127 aa  40.4  0.008  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  0.801835 
 
 
-
 
NC_009952  Dshi_2866  hypothetical protein  25.23 
 
 		 123 aa  40.4  0.009  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
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