35 homologs were found in PanDaTox collection
for query gene Rsph17025_0087 on replicon NC_009428
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009428  Rsph17025_0087  hypothetical protein  100 
 
 		 123 aa  248  2e-65  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.5065  normal  1 
 
 
-
 
NC_007493  RSP_0975  succinate dehydrogenase subunit D  99.19 
 
 		 123 aa  248  3e-65  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_2635  putative succinate dehydrogenase, hydrophobic membrane anchor protein  99.19 
 
 		 123 aa  248  3e-65  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_2866  hypothetical protein  46.34 
 
 		 123 aa  119  1.9999999999999998e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008686  Pden_0568  putative succinate dehydrogenase, hydrophobic membrane anchor protein  47.15 
 
 		 129 aa  118  1.9999999999999998e-26  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.0825505 
 
 
-
 
NC_007802  Jann_0810  succinate dehydrogenase subunit D  37.4 
 
 		 123 aa  97.4  5e-20  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.851404 
 
 
-
 
NC_008043  TM1040_3526  succinate dehydrogenase subunit D  42.28 
 
 		 123 aa  87.8  5e-17  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_7245  succinate dehydrogenase, hydrophobic membrane anchor protein  35 
 
 		 137 aa  63.9  0.0000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396127  n/a   
 
 
-
 
NC_010511  M446_6039  succinate dehydrogenase, hydrophobic membrane anchor protein  34.17 
 
 		 137 aa  63.2  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0685536 
 
 
-
 
NC_004310  BR1903  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  30.25 
 
 		 131 aa  60.5  0.000000008  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein  32.77 
 
 		 126 aa  60.1  0.00000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.705456  normal  0.476216 
 
 
-
 
NC_009505  BOV_1831  succinate dehydrogenase, hydrophobic membrane anchor protein  30.25 
 
 		 131 aa  59.7  0.00000001  Brucella ovis ATCC 25840  Bacteria  normal  0.405977  n/a   
 
 
-
 
NC_011369  Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein  32.77 
 
 		 126 aa  58.9  0.00000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_0952  succinate dehydrogenase hydrophobic membrane anchor  30.25 
 
 		 131 aa  58.2  0.00000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.676521  n/a   
 
 
-
 
NC_009636  Smed_2958  succinate dehydrogenase hydrophobic membrane anchor  31.71 
 
 		 126 aa  57.4  0.00000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.0363094  normal  1 
 
 
-
 
NC_008347  Mmar10_2847  succinate dehydrogenase subunit D  32.23 
 
 		 123 aa  54.7  0.0000005  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_1966  succinate dehydrogenase hydrophobic membrane anchor  30 
 
 		 135 aa  52  0.000003  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.192092 
 
 
-
 
NC_010725  Mpop_4277  succinate dehydrogenase, hydrophobic membrane anchor protein  29.17 
 
 		 139 aa  52  0.000003  Methylobacterium populi BJ001  Bacteria  normal  0.692368  normal  0.965438 
 
 
-
 
NC_008254  Meso_3245  succinate dehydrogenase subunit D  30.25 
 
 		 127 aa  51.6  0.000004  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008687  Pden_3020  succinate dehydrogenase, cytochrome b subunit  35.56 
 
 		 127 aa  51.6  0.000004  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.915417 
 
 
-
 
NC_010172  Mext_3601  succinate dehydrogenase, hydrophobic membrane anchor protein  29.17 
 
 		 139 aa  51.2  0.000005  Methylobacterium extorquens PA1  Bacteria  normal  0.0736554  normal  1 
 
 
-
 
NC_011757  Mchl_3893  succinate dehydrogenase, hydrophobic membrane anchor protein  29.17 
 
 		 139 aa  51.2  0.000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.20647  normal  1 
 
 
-
 
NC_008783  BARBAKC583_0089  succinate dehydrogenase, hydrophobic membrane anchor protein  28.1 
 
 		 128 aa  48.5  0.00003  Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_011989  Avi_4136  succinate dehydrogenase hydrophobic membrane anchor  27.73 
 
 		 126 aa  47.8  0.00006  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010581  Bind_2750  succinate dehydrogenase, hydrophobic membrane anchor protein  31.4 
 
 		 130 aa  47  0.00009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_3617  succinate dehydrogenase, cytochrome b subunit  29.41 
 
 		 133 aa  46.2  0.0002  Nitrobacter hamburgensis X14  Bacteria  normal  0.0610127  n/a   
 
 
-
 
NC_011365  Gdia_2108  succinate dehydrogenase, hydrophobic membrane anchor protein  31.36 
 
 		 140 aa  46.2  0.0002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_00603  succinate dehydrogenase, hydrophobic membrane anchor protein  31.01 
 
 		 128 aa  45.4  0.0003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008048  Sala_3031  succinate dehydrogenase, cytochrome b subunit  33.61 
 
 		 134 aa  44.7  0.0004  Sphingopyxis alaskensis RB2256  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_0458  succinate dehydrogenase, hydrophobic membrane anchor protein  33.72 
 
 		 139 aa  43.9  0.0008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.152846  normal  1 
 
 
-
 
NC_009485  BBta_0229  succinate dehydrogenase subunit D  31.09 
 
 		 124 aa  42.7  0.001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0481798  normal  1 
 
 
-
 
NC_008340  Mlg_1333  succinate dehydrogenase subunit D  27.42 
 
 		 126 aa  42.4  0.002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.934114 
 
 
-
 
NC_008789  Hhal_0045  succinate dehydrogenase, cytochrome b subunit  32.61 
 
 		 127 aa  42  0.003  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A1203  succinate dehydrogenase subunit D  31.11 
 
 		 128 aa  42  0.003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.767553  n/a   
 
 
-
 
NC_007406  Nwi_2799  succinate dehydrogenase, cytochrome b subunit  28.43 
 
 		 135 aa  40.4  0.008  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
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