67 homologs were found in PanDaTox collection
for query gene Ssed_1145 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  100 
 
 		 151 aa  312  9.999999999999999e-85  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal  1 
 
 
-
 
NC_009092  Shew_1051  positive regulator of sigma E, RseC/MucC  66.23 
 
 		 158 aa  210  5.999999999999999e-54  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000179706  normal  1 
 
 
-
 
NC_010506  Swoo_1240  positive regulator of sigma E, RseC/MucC  70.86 
 
 		 151 aa  201  2e-51  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0000139307  hitchhiker  0.0000157643 
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  58.94 
 
 		 157 aa  184  3e-46  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1034  positive regulator of sigma E, RseC/MucC  58.28 
 
 		 154 aa  182  2.0000000000000003e-45  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00221159  n/a   
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  56.95 
 
 		 157 aa  181  5.0000000000000004e-45  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000634638  n/a   
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  56.29 
 
 		 157 aa  179  2e-44  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  56.29 
 
 		 157 aa  179  2e-44  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  56.29 
 
 		 157 aa  179  2e-44  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal  1 
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  50.99 
 
 		 177 aa  175  2e-43  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  56.08 
 
 		 157 aa  164  4e-40  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  48.34 
 
 		 168 aa  157  5e-38  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_008321  Shewmr4_2851  positive regulator of sigma(E), RseC/MucC  59.6 
 
 		 157 aa  151  2.9999999999999998e-36  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00520564  normal  1 
 
 
-
 
NC_008577  Shewana3_3029  positive regulator of sigma(E), RseC/MucC  59.6 
 
 		 157 aa  140  8e-33  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00208622  normal  0.944765 
 
 
-
 
NC_008322  Shewmr7_2933  positive regulator of sigma(E), RseC/MucC  58.94 
 
 		 157 aa  138  3e-32  Shewanella sp. MR-7  Bacteria  normal  0.0424162  normal  1 
 
 
-
 
NC_008700  Sama_0877  sigma-E factor regulatory protein RseC  49.01 
 
 		 159 aa  131  3e-30  Shewanella amazonensis SB2B  Bacteria  normal  0.475594  normal  0.0507678 
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  32.88 
 
 		 148 aa  88.2  3e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_011312  VSAL_I2528  sigma-E factor regulatory protein RseC  35.06 
 
 		 161 aa  83.6  0.000000000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  31.97 
 
 		 159 aa  70.9  0.000000000006  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  31.29 
 
 		 159 aa  69.3  0.00000000002  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  69.3  0.00000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  68.9  0.00000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  68.9  0.00000000002  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  69.3  0.00000000002  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  68.9  0.00000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
-
 
NC_012892  B21_02428  hypothetical protein  31.29 
 
 		 159 aa  68.9  0.00000000002  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  31.29 
 
 		 159 aa  68.9  0.00000000002  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  32.69 
 
 		 167 aa  68.9  0.00000000002  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000000405546  n/a   
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  30.82 
 
 		 151 aa  68.2  0.00000000003  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  34 
 
 		 149 aa  68.2  0.00000000003  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00000126596  normal  0.71927 
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  30.82 
 
 		 151 aa  68.2  0.00000000003  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  30.82 
 
 		 151 aa  68.2  0.00000000003  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  31.97 
 
 		 159 aa  67.8  0.00000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  0.156123 
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  67.4  0.00000000007  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal  1 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  67.4  0.00000000007  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  67.4  0.00000000007  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  31.29 
 
 		 159 aa  67.4  0.00000000007  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.74612 
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  33.33 
 
 		 167 aa  65.9  0.0000000002  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  30.82 
 
 		 150 aa  65.1  0.0000000003  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_008309  HS_1608  positive sigma-E factor regulatory protein  36.49 
 
 		 167 aa  65.1  0.0000000003  Haemophilus somnus 129PT  Bacteria  normal  0.0389331  n/a   
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  28.36 
 
 		 155 aa  64.3  0.0000000006  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
-
 
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  29.87 
 
 		 157 aa  63.5  0.000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_011662  Tmz1t_2318  positive regulator of sigma E, RseC/MucC  30.08 
 
 		 155 aa  63.2  0.000000001  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_4126  sigma-E factor regulatory protein RseC  32.45 
 
 		 159 aa  63.2  0.000000001  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009436  Ent638_3057  SoxR reducing system protein RseC  32.41 
 
 		 158 aa  63.5  0.000000001  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  28.97 
 
 		 157 aa  62.8  0.000000002  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  29.45 
 
 		 150 aa  62.4  0.000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_009457  VC0395_A2042  sigma-E factor regulatory protein RseC  34.64 
 
 		 156 aa  58.9  0.00000003  Vibrio cholerae O395  Bacteria  normal  0.436748  n/a   
 
 
-
 
NC_013456  VEA_002494  sigma factor RpoE regulatory protein RseC  31.73 
 
 		 156 aa  58.2  0.00000004  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000000204046  n/a   
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  31.37 
 
 		 151 aa  55.1  0.0000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal  1 
 
 
-
 
NC_009783  VIBHAR_03539  positive regulator of sigma E activity  29.81 
 
 		 156 aa  54.3  0.0000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  31.31 
 
 		 151 aa  53.1  0.000001  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  31.07 
 
 		 146 aa  51.6  0.000004  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_13720  Positive regulator for alginate biosynthesis MucC  26.67 
 
 		 156 aa  48.9  0.00002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  27.91 
 
 		 147 aa  48.5  0.00003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  26.12 
 
 		 149 aa  47.4  0.00006  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  29.27 
 
 		 143 aa  47  0.0001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
NC_012880  Dd703_2788  SoxR reducing system protein RseC  31.03 
 
 		 155 aa  46.6  0.0001  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00872544  n/a   
 
 
-
 
NC_007484  Noc_2463  positive regulator of sigma(E), RseC/MucC  29.89 
 
 		 146 aa  45.8  0.0002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.939617  n/a   
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  26.42 
 
 		 159 aa  46.2  0.0002  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_010718  Nther_1269  positive regulator of sigma E, RseC/MucC  28.76 
 
 		 151 aa  45.4  0.0003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  26.39 
 
 		 151 aa  44.7  0.0004  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal  1 
 
 
-
 
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  20.29 
 
 		 147 aa  43.1  0.001  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal  1 
 
 
-
 
NC_013223  Dret_1803  positive regulator of sigma E, RseC/MucC  25.9 
 
 		 151 aa  42.7  0.002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  24.83 
 
 		 156 aa  42  0.003  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  32.69 
 
 		 183 aa  41.6  0.003  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009718  Fnod_1514  positive regulator of sigma E, RseC/MucC  30.66 
 
 		 150 aa  40.4  0.009  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
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