34 homologs were found in PanDaTox collection
for query gene Daro_2023 on replicon NC_007298
Organism: Dechloromonas aromatica RCB



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  100 
 
 		 147 aa  295  1e-79  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal  1 
 
 
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NC_010465  YPK_1185  SoxR reducing system protein RseC  33.1 
 
 		 151 aa  64.3  0.0000000005  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
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NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  33.1 
 
 		 151 aa  64.3  0.0000000005  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
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NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  33.1 
 
 		 151 aa  64.3  0.0000000005  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
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NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  30 
 
 		 149 aa  57.4  0.00000006  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
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NC_012917  PC1_3074  SoxR reducing system protein RseC  29.58 
 
 		 150 aa  57  0.00000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
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NC_013421  Pecwa_1201  SoxR reducing system protein RseC  28.87 
 
 		 150 aa  56.2  0.0000001  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
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NC_009832  Spro_3673  SoxR reducing system protein RseC  30.43 
 
 		 157 aa  56.2  0.0000001  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
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NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  22.73 
 
 		 155 aa  54.3  0.0000005  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
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NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  29.75 
 
 		 167 aa  52  0.000003  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
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NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  30.71 
 
 		 159 aa  48.5  0.00003  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
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NC_011353  ECH74115_3807  SoxR reducing system protein RseC  30 
 
 		 159 aa  48.1  0.00004  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
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NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  30 
 
 		 159 aa  48.1  0.00004  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
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CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  30 
 
 		 159 aa  48.1  0.00004  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
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NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  30 
 
 		 159 aa  48.1  0.00004  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
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NC_012892  B21_02428  hypothetical protein  30 
 
 		 159 aa  48.1  0.00004  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
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NC_009800  EcHS_A2725  SoxR reducing system protein RseC  30 
 
 		 159 aa  47.8  0.00006  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
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NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  24.49 
 
 		 157 aa  47.8  0.00006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
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NC_010468  EcolC_1107  SoxR reducing system protein RseC  30 
 
 		 159 aa  47.8  0.00006  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
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CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  30 
 
 		 159 aa  47.8  0.00006  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
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NC_011662  Tmz1t_2318  positive regulator of sigma E, RseC/MucC  29.32 
 
 		 155 aa  46.6  0.0001  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
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NC_004347  SO_1345  sigma-E factor regulatory protein RseC  28.04 
 
 		 157 aa  45.8  0.0002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
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NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  33.1 
 
 		 147 aa  45.4  0.0003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
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NC_013223  Dret_0535  positive regulator of sigma E, RseC/MucC  33.67 
 
 		 125 aa  44.7  0.0004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  31.65 
 
 		 177 aa  43.9  0.0008  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
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NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  20.29 
 
 		 151 aa  43.1  0.001  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal  1 
 
 
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NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  23.39 
 
 		 143 aa  42.4  0.002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
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NC_009436  Ent638_3057  SoxR reducing system protein RseC  27.94 
 
 		 158 aa  42  0.003  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  25.36 
 
 		 152 aa  41.2  0.004  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_1491  positive regulator of sigma(E), RseC/MucC  28.87 
 
 		 180 aa  41.2  0.005  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.392689 
 
 
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NC_007498  Pcar_1825  positive regulator of sigma E activity  38.54 
 
 		 156 aa  40.8  0.006  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  0.00000000801133  n/a   
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  31.62 
 
 		 183 aa  40.8  0.006  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
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NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  28.99 
 
 		 156 aa  40.4  0.008  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  21.43 
 
 		 149 aa  40  0.01  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00000126596  normal  0.71927 
 
 
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