Gene Spea_1034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1034 
Symbol 
ID5661433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp1256668 
End bp1257132 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content44% 
IMG OID641235580 
Productpositive regulator of sigma E, RseC/MucC 
Protein accessionYP_001500896 
Protein GI157960862 
COG category[T] Signal transduction mechanisms 
COG ID[COG3086] Positive regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00221159 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGAAG AAATCGCTAG AGTTGTCGCT AATGGCAACT CTGGTTGGGT CGTTGTTGAA 
GTTGAGATGA AGAGTGCCTG TAATCATTGT GAAAGCGGTG ATTCTTGTGG CACATCTGCC 
GTTTCAAAAG CCTTTTCGCC TAAAGTACAA CGTTTTTCAA TTCAGAGTGA TCGGCAGTTT 
GTTAAAGGCG AGCGCTTAAA ACTGGGTTTA CCGGAAAGCG TAATCTTAAA AGCAGCAACC 
TTAGTCTATA TTTTACCGCT TATTGGGTTG TTTATTGGCG CTTTCAGCGC TAATCAAATC 
GGCTCTTTAA TAGGAAGCGC TTCTGAACTG TTATCTATTT CGGGAGCATT AGTCGGTAGT 
TTCTGTTTCT GGGCTGTCGG AAAAAAAGCG GCCAAGAGAT TAGAAGCGCA GGCGCAGCCT 
GTCATTATCA AGTCTCTGGG CAAGCCTATC GAGATAGCTA ATTAG
 
Protein sequence
MMEEIARVVA NGNSGWVVVE VEMKSACNHC ESGDSCGTSA VSKAFSPKVQ RFSIQSDRQF 
VKGERLKLGL PESVILKAAT LVYILPLIGL FIGAFSANQI GSLIGSASEL LSISGALVGS 
FCFWAVGKKA AKRLEAQAQP VIIKSLGKPI EIAN