Gene VEA_002494 details

Gene Information

• Locus tag: VEA_002494
• ID: 8556210
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 974761
• End bp: 975231
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 646405573
• Product: sigma factor RpoE regulatory protein RseC
• Protein accession: YP_003285121
• Protein GI: 262393267
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3086] Positive regulator of sigma E activity

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000204046
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGACCG CGTTGGCTAC TGTGACAGAC GTACATCGTC GCGGTAAACA ATACGAAATT 
GATTTAAGCT GCGAACAGCA GACCAGTTGC AGTAGTTGCT CTTCACAGAA AAGCTGTGGA 
ACGGGCGTTG TGACTAAAGC CATTGGTAAC AAGAGTTTAT CTTGGCACCT GCGCACGGAT 
AAATCAGTGA AGATAGGTCA AGTCGTCGAG ATAGGCTTTC CTGAGTCGAG CCTGATAAAA 
TCAGCAATGG CGGTTTATTT ACTGCCGTTG TTTGGTTTGA TTATCGGTGC GATGTTTGGT 
CACTTCCTAT TAGCGCCGCT GACCGCGGGC GGGGAAGGTA TCATCATATT GGCATCAGTA 
CTATTTGCAG CTGGTGGAAT GTGGATCGCA AAACGTGTTT CTCGTCCGTT AGAGGATGAA 
TCCAAGCGCC AAGTTACCCT CGTTCGGGTA CTTGGAGAGC CAATCCAGTA A 

 

Protein sequence

MMTALATVTD VHRRGKQYEI DLSCEQQTSC SSCSSQKSCG TGVVTKAIGN KSLSWHLRTD 
KSVKIGQVVE IGFPESSLIK SAMAVYLLPL FGLIIGAMFG HFLLAPLTAG GEGIIILASV 
LFAAGGMWIA KRVSRPLEDE SKRQVTLVRV LGEPIQ