Gene SO_1345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1345 
SymbolrseC 
ID1169166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1401397 
End bp1401870 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content46% 
IMG OID637343289 
Productsigma-E factor regulatory protein RseC 
Protein accessionNP_716965 
Protein GI24372923 
COG category[T] Signal transduction mechanisms 
COG ID[COG3086] Positive regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGAAG AAGTGGCGAG GGTAGTCGCT TGCGATAATC AAGGTTGGCT CACCGTTGAG 
GTTGAACTTA AAAGCACCTG CAAGAGTTGC AATAGCAGTG AATCTTGCGG CACTTCTGCA 
GTTGCTCAAG CTTTTTCTTC AAAAACTCAA CAATTCTCCA TTCAAAGTGA ACGTACCTGC 
GAGGTTGGTG AACTGCTGAA ACTGGGGCTA CCTGAGAGTG TGATCCTCAA AGCGGCGGCG 
TTGGTTTATT TGATGCCCCT GCTTGGCTTA TTTTTGGGCG CCTTATCAGG GCAGTTTTTT 
GCAGGTCTAT TTCAAATCAA TGCTGATCTC AGTGCGATAG GGTTCGCAGC TTTAGGTGCT 
ATCACTGCGT GGTTGATTGG AAAACGTAAG GCAAAACAGC TTGAAGTAGA TTCGCAACCT 
GTCATTTTGG CTTATTTAGG TGCAGGGATC AGTTTAGAGA AATTACCCGT TTAA
 
Protein sequence
MMEEVARVVA CDNQGWLTVE VELKSTCKSC NSSESCGTSA VAQAFSSKTQ QFSIQSERTC 
EVGELLKLGL PESVILKAAA LVYLMPLLGL FLGALSGQFF AGLFQINADL SAIGFAALGA 
ITAWLIGKRK AKQLEVDSQP VILAYLGAGI SLEKLPV