66 homologs were found in PanDaTox collection
for query gene Sden_2769 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  100 
 
 		 177 aa  360  5.0000000000000005e-99  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  55.7 
 
 		 168 aa  183  1.0000000000000001e-45  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  58.44 
 
 		 157 aa  181  5.0000000000000004e-45  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  58.44 
 
 		 157 aa  180  9.000000000000001e-45  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_009092  Shew_1051  positive regulator of sigma E, RseC/MucC  57.62 
 
 		 158 aa  180  9.000000000000001e-45  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000179706  normal  1 
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  58.44 
 
 		 157 aa  180  9.000000000000001e-45  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal  1 
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  58.44 
 
 		 157 aa  180  9.000000000000001e-45  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  57.79 
 
 		 157 aa  179  2.9999999999999997e-44  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000634638  n/a   
 
 
-
 
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  50.99 
 
 		 151 aa  175  2e-43  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal  1 
 
 
-
 
NC_009901  Spea_1034  positive regulator of sigma E, RseC/MucC  52.98 
 
 		 154 aa  162  2.0000000000000002e-39  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00221159  n/a   
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  57.14 
 
 		 157 aa  160  7e-39  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_008321  Shewmr4_2851  positive regulator of sigma(E), RseC/MucC  57.79 
 
 		 157 aa  148  3e-35  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00520564  normal  1 
 
 
-
 
NC_010506  Swoo_1240  positive regulator of sigma E, RseC/MucC  52.32 
 
 		 151 aa  141  4e-33  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0000139307  hitchhiker  0.0000157643 
 
 
-
 
NC_008577  Shewana3_3029  positive regulator of sigma(E), RseC/MucC  58.44 
 
 		 157 aa  137  7e-32  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00208622  normal  0.944765 
 
 
-
 
NC_008322  Shewmr7_2933  positive regulator of sigma(E), RseC/MucC  57.79 
 
 		 157 aa  135  4e-31  Shewanella sp. MR-7  Bacteria  normal  0.0424162  normal  1 
 
 
-
 
NC_008700  Sama_0877  sigma-E factor regulatory protein RseC  52.32 
 
 		 159 aa  132  1.9999999999999998e-30  Shewanella amazonensis SB2B  Bacteria  normal  0.475594  normal  0.0507678 
 
 
-
 
NC_011312  VSAL_I2528  sigma-E factor regulatory protein RseC  31.94 
 
 		 161 aa  85.5  4e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  33.58 
 
 		 167 aa  82  0.000000000000004  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000000405546  n/a   
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  36.63 
 
 		 149 aa  73.9  0.000000000001  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00000126596  normal  0.71927 
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  32.89 
 
 		 148 aa  73.2  0.000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_009436  Ent638_3057  SoxR reducing system protein RseC  32.65 
 
 		 158 aa  68.6  0.00000000005  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  32.64 
 
 		 167 aa  67  0.0000000001  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_003910  CPS_4126  sigma-E factor regulatory protein RseC  37.84 
 
 		 159 aa  65.9  0.0000000003  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  30.14 
 
 		 150 aa  63.5  0.000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  27.21 
 
 		 159 aa  62.8  0.000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  27.89 
 
 		 159 aa  63.2  0.000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  27.89 
 
 		 159 aa  63.2  0.000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
-
 
NC_012892  B21_02428  hypothetical protein  27.89 
 
 		 159 aa  63.2  0.000000002  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  27.89 
 
 		 159 aa  63.2  0.000000002  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  27.21 
 
 		 159 aa  62.8  0.000000002  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  27.21 
 
 		 159 aa  62.8  0.000000002  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  27.89 
 
 		 159 aa  63.2  0.000000002  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  28.19 
 
 		 159 aa  62  0.000000004  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  28.08 
 
 		 150 aa  61.6  0.000000006  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  28.77 
 
 		 159 aa  60.5  0.00000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal  1 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  28.77 
 
 		 159 aa  60.5  0.00000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  28.77 
 
 		 159 aa  60.5  0.00000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  28.77 
 
 		 159 aa  60.5  0.00000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.74612 
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  35.29 
 
 		 151 aa  59.3  0.00000002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  28.08 
 
 		 159 aa  60.1  0.00000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  0.156123 
 
 
-
 
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  28.67 
 
 		 157 aa  59.3  0.00000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  31.68 
 
 		 155 aa  58.9  0.00000004  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  34.29 
 
 		 151 aa  57.4  0.0000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal  1 
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  26.21 
 
 		 157 aa  57  0.0000001  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_008309  HS_1608  positive sigma-E factor regulatory protein  30 
 
 		 167 aa  56.2  0.0000002  Haemophilus somnus 129PT  Bacteria  normal  0.0389331  n/a   
 
 
-
 
NC_009783  VIBHAR_03539  positive regulator of sigma E activity  38.83 
 
 		 156 aa  56.6  0.0000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002494  sigma factor RpoE regulatory protein RseC  43.75 
 
 		 156 aa  55.5  0.0000004  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000000204046  n/a   
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  29.71 
 
 		 152 aa  53.1  0.000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2042  sigma-E factor regulatory protein RseC  33.33 
 
 		 156 aa  52.8  0.000002  Vibrio cholerae O395  Bacteria  normal  0.436748  n/a   
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  31.3 
 
 		 146 aa  51.6  0.000005  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_13720  Positive regulator for alginate biosynthesis MucC  29.41 
 
 		 156 aa  51.6  0.000006  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  38.41 
 
 		 183 aa  51.2  0.000007  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  27.21 
 
 		 151 aa  50.4  0.00001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  27.21 
 
 		 151 aa  50.4  0.00001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  27.21 
 
 		 151 aa  50.4  0.00001  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
-
 
NC_011662  Tmz1t_2318  positive regulator of sigma E, RseC/MucC  27.91 
 
 		 155 aa  50.1  0.00002  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  29.17 
 
 		 149 aa  50.1  0.00002  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  32.88 
 
 		 151 aa  49.7  0.00002  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal  1 
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  28.66 
 
 		 156 aa  48.5  0.00004  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_007484  Noc_2463  positive regulator of sigma(E), RseC/MucC  32.1 
 
 		 146 aa  47.8  0.00008  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.939617  n/a   
 
 
-
 
NC_010718  Nther_1269  positive regulator of sigma E, RseC/MucC  26.96 
 
 		 151 aa  45.8  0.0003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  31.65 
 
 		 147 aa  43.9  0.001  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal  1 
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  29.17 
 
 		 159 aa  43.5  0.002  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_013171  Apre_0914  positive regulator of sigma E, RseC/MucC  26.32 
 
 		 138 aa  41.6  0.006  Anaerococcus prevotii DSM 20548  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_1301  positive regulator of sigma E, RseC/MucC  26.67 
 
 		 136 aa  41.2  0.008  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_1825  positive regulator of sigma E activity  25.37 
 
 		 156 aa  40.8  0.009  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  0.00000000801133  n/a   
 
 
-
 
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