| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1145 |
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| Symbol | |
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| ID | 5610977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1365131 |
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| End bp | 1365586 |
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| Gene Length | 456 bp |
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| Protein Length | 151 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931994 |
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| Product | positive regulator of sigma E, RseC/MucC |
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| Protein accession | YP_001472884 |
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| Protein GI | 157374284 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3086] Positive regulator of sigma E activity |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000688126 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGGAAG AGATGGCCAA GGTGATCCGA TGTGATAATC AGGGCTGGGT GACGGTTGAA
GTCCAGGTCA AGAATGCCTG TAACCACTGT GATAATTCTG AGTCATGTGG CACCTCCGCC
GTTTCAAAGG CGTTTTCACC TAAGGTACAA GAGTTTTCAA TTCCATCCGA TACTCATTAT
GAGCCTGGAG AGATACTCAG GCTTGGCTTG CCCGAGAGTG TTATTTTGAA AGCGGCTGCG
CTGGTTTACC TGATGCCTCT GCTTGGTCTC TTTATTGGTG CAATGCTTGC TTCGCTGATA
TCCCATCAAA TGGGGGTAAT TAGCAGTGAT CTCTTTGTGA TCCCATTTGC GTTAGTTGGT
GCTTTTCTTT TCTGGCGATT AGCGAAAACG AAAGCCCGTC AGATGGAGAC CTTAAGTCAA
CCGATCATTC TCTCTCACTT AGGTCACTCC ATTTAA
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| Protein sequence | MMEEMAKVIR CDNQGWVTVE VQVKNACNHC DNSESCGTSA VSKAFSPKVQ EFSIPSDTHY
EPGEILRLGL PESVILKAAA LVYLMPLLGL FIGAMLASLI SHQMGVISSD LFVIPFALVG
AFLFWRLAKT KARQMETLSQ PIILSHLGHS I
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