More than 300 homologs were found in PanDaTox collection
for query gene Pput_3074 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_3074  pyruvate carboxyltransferase  100 
 
 
306 aa  617  1e-176  Pseudomonas putida F1  Bacteria  normal  0.0190421  normal 
 
 
-
 
NC_007492  Pfl01_3654  hydroxymethylglutaryl-CoA lyase  60.27 
 
 
299 aa  370  1e-101  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0630119 
 
 
-
 
NC_008463  PA14_38490  hydroxymethylglutaryl-CoA lyase  61.17 
 
 
300 aa  368  1e-101  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3278  hydroxymethylglutaryl-CoA lyase  61.51 
 
 
300 aa  370  1e-101  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2742  hydroxymethylglutaryl-CoA lyase  60.82 
 
 
299 aa  365  1e-100  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1943  hydroxymethylglutaryl-CoA lyase  60.2 
 
 
299 aa  366  1e-100  Pseudomonas putida W619  Bacteria  normal  0.483934  hitchhiker  0.000417953 
 
 
-
 
NC_007005  Psyr_2471  hydroxymethylglutaryl-CoA lyase  60.14 
 
 
299 aa  363  2e-99  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.100008 
 
 
-
 
NC_009439  Pmen_2029  hydroxymethylglutaryl-CoA lyase  58.42 
 
 
299 aa  363  2e-99  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.0062803  normal  0.740342 
 
 
-
 
NC_010322  PputGB1_2384  hydroxymethylglutaryl-CoA lyase  59.87 
 
 
299 aa  360  1e-98  Pseudomonas putida GB-1  Bacteria  normal  normal  0.953332 
 
 
-
 
NC_009512  Pput_2234  hydroxymethylglutaryl-CoA lyase  59.2 
 
 
299 aa  358  8e-98  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3540  hydroxymethylglutaryl-CoA lyase  58.86 
 
 
299 aa  357  1.9999999999999998e-97  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1599  hydroxymethylglutaryl-CoA lyase  53.16 
 
 
308 aa  352  7e-96  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2977  pyruvate carboxyltransferase  55.97 
 
 
307 aa  350  2e-95  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1526  pyruvate carboxyltransferase  55.97 
 
 
307 aa  349  3e-95  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_49510  hydroxymethylglutaryl-CoA lyase  59.45 
 
 
300 aa  348  5e-95  Azotobacter vinelandii DJ  Bacteria  hitchhiker  0.00876047  n/a   
 
 
-
 
NC_007298  Daro_0086  hydroxymethylglutaryl-CoA lyase  55.44 
 
 
301 aa  347  1e-94  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02416  hydroxymethylglutaryl-CoA lyase  53.85 
 
 
298 aa  347  1e-94  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2929  pyruvate carboxyltransferase  53.11 
 
 
305 aa  347  1e-94  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0756431  n/a   
 
 
-
 
NC_008345  Sfri_2731  pyruvate carboxyltransferase  56.08 
 
 
296 aa  345  4e-94  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2832  pyruvate carboxyltransferase  55.29 
 
 
307 aa  345  7e-94  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2850  pyruvate carboxyltransferase  54.61 
 
 
307 aa  344  8e-94  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1893  hydroxymethylglutaryl-CoA lyase  55.59 
 
 
315 aa  344  8.999999999999999e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_0753  pyruvate carboxyltransferase  57.77 
 
 
311 aa  343  2.9999999999999997e-93  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2398  hydroxymethylglutaryl-CoA lyase  55.25 
 
 
315 aa  342  5.999999999999999e-93  Shewanella sp. MR-7  Bacteria  normal  normal  0.515821 
 
 
-
 
NC_008700  Sama_1358  pyruvate carboxyltransferase  55.07 
 
 
296 aa  341  1e-92  Shewanella amazonensis SB2B  Bacteria  normal  0.849399  normal  0.697753 
 
 
-
 
NC_008577  Shewana3_1668  hydroxymethylglutaryl-CoA lyase  54.92 
 
 
310 aa  340  2e-92  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2326  hydroxymethylglutaryl-CoA lyase  54.92 
 
 
315 aa  339  2.9999999999999998e-92  Shewanella sp. MR-4  Bacteria  normal  normal  0.43357 
 
 
-
 
NC_009438  Sputcn32_1715  pyruvate carboxyltransferase  55.9 
 
 
315 aa  339  4e-92  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2574  pyruvate carboxyltransferase  56.21 
 
 
301 aa  337  9.999999999999999e-92  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05477  hydroxymethylglutaryl-CoA lyase  54.85 
 
 
298 aa  337  1.9999999999999998e-91  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1454  pyruvate carboxyltransferase  55.07 
 
 
296 aa  337  1.9999999999999998e-91  Shewanella sediminis HAW-EB3  Bacteria  normal  0.119329  normal 
 
 
-
 
NC_013457  VEA_001540  hydroxymethylglutaryl-CoA lyase  53.31 
 
 
302 aa  337  1.9999999999999998e-91  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2802  pyruvate carboxyltransferase  53.85 
 
 
301 aa  335  7.999999999999999e-91  Shewanella pealeana ATCC 700345  Bacteria  normal  0.906951  n/a   
 
 
-
 
NC_010506  Swoo_3227  pyruvate carboxyltransferase  54.21 
 
 
296 aa  333  3e-90  Shewanella woodyi ATCC 51908  Bacteria  normal  0.461669  normal  0.0268749 
 
 
-
 
NC_009720  Xaut_1854  pyruvate carboxyltransferase  56 
 
 
301 aa  332  4e-90  Xanthobacter autotrophicus Py2  Bacteria  normal  0.41694  normal 
 
 
-
 
NC_008740  Maqu_2126  pyruvate carboxyltransferase  54.36 
 
 
299 aa  331  1e-89  Marinobacter aquaeolei VT8  Bacteria  normal  0.129667  n/a   
 
 
-
 
NC_007954  Sden_2250  hydroxymethylglutaryl-CoA lyase  53.04 
 
 
295 aa  330  2e-89  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2780  pyruvate carboxyltransferase  54.05 
 
 
301 aa  326  4.0000000000000003e-88  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.262601  normal  0.241199 
 
 
-
 
NC_007958  RPD_2536  pyruvate carboxyltransferase  53 
 
 
306 aa  326  4.0000000000000003e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1800  pyruvate carboxyltransferase  55.82 
 
 
298 aa  325  6e-88  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0874728 
 
 
-
 
NC_007778  RPB_2932  pyruvate carboxyltransferase  53.69 
 
 
301 aa  323  2e-87  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.991309 
 
 
-
 
NC_010717  PXO_00102  hydroxymethylglutaryl-CoA lyase  58.56 
 
 
298 aa  323  2e-87  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.135051  n/a   
 
 
-
 
NC_011981  Avi_7692  hydroxymethylglutaryl-CoA lyase  54.52 
 
 
307 aa  323  3e-87  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2115  pyruvate carboxyltransferase  52.82 
 
 
306 aa  323  3e-87  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.348555 
 
 
-
 
NC_010622  Bphy_0165  hydroxymethylglutaryl-CoA lyase  51.64 
 
 
308 aa  322  4e-87  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4049  hydroxymethylglutaryl-CoA lyase  51.85 
 
 
303 aa  322  6e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0594588  normal  0.373552 
 
 
-
 
NC_011004  Rpal_2810  pyruvate carboxyltransferase  52.51 
 
 
301 aa  318  6e-86  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.631686  n/a   
 
 
-
 
NC_010681  Bphyt_0440  hydroxymethylglutaryl-CoA lyase  51.49 
 
 
308 aa  318  7.999999999999999e-86  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_1542  hydroxymethylglutaryl-CoA lyase  50.84 
 
 
299 aa  318  1e-85  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.131196  n/a   
 
 
-
 
NC_007951  Bxe_A4270  hydroxymethylglutaryl-CoA lyase  51.82 
 
 
309 aa  317  2e-85  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0533201 
 
 
-
 
NC_008044  TM1040_0739  hydroxymethylglutaryl-CoA lyase  57.41 
 
 
288 aa  315  7e-85  Ruegeria sp. TM1040  Bacteria  normal  0.5891  normal  0.963586 
 
 
-
 
NC_006368  lpp1793  hypothetical protein  50.5 
 
 
302 aa  314  9.999999999999999e-85  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1794  hypothetical protein  50 
 
 
302 aa  313  1.9999999999999998e-84  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010117  COXBURSA331_A0633  hydroxymethylglutaryl-CoA lyase  50.5 
 
 
299 aa  313  1.9999999999999998e-84  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0121  hydroxymethylglutaryl-CoA lyase  50.17 
 
 
309 aa  311  5.999999999999999e-84  Ralstonia pickettii 12D  Bacteria  normal  normal  0.649671 
 
 
-
 
NC_009074  BURPS668_0353  hydroxymethylglutaryl-CoA lyase  52.17 
 
 
311 aa  311  9e-84  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0543  hydroxymethylglutaryl-CoA lyase  52.17 
 
 
311 aa  311  9e-84  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0367  hydroxymethylglutaryl-CoA lyase  52.17 
 
 
311 aa  311  9e-84  Burkholderia pseudomallei 1106a  Bacteria  normal  0.128401  n/a   
 
 
-
 
NC_013457  VEA_000381  hydroxymethylglutaryl-CoA lyase  49.33 
 
 
309 aa  311  1e-83  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0607  hydroxymethylglutaryl-CoA lyase  51.49 
 
 
310 aa  310  1e-83  Cupriavidus metallidurans CH34  Bacteria  normal  0.314247  normal  0.692973 
 
 
-
 
NC_010682  Rpic_0114  hydroxymethylglutaryl-CoA lyase  49.83 
 
 
309 aa  309  2.9999999999999997e-83  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0153  hydroxymethylglutaryl-CoA lyase  51.88 
 
 
311 aa  309  4e-83  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0261  hydroxymethylglutaryl-CoA lyase  52.86 
 
 
309 aa  306  2.0000000000000002e-82  Ralstonia solanacearum GMI1000  Bacteria  normal  0.39725  normal 
 
 
-
 
NC_008782  Ajs_3757  hydroxymethylglutaryl-CoA lyase  50.17 
 
 
304 aa  306  2.0000000000000002e-82  Acidovorax sp. JS42  Bacteria  normal  0.0122709  normal 
 
 
-
 
NC_010084  Bmul_2955  hydroxymethylglutaryl-CoA lyase  51.66 
 
 
310 aa  307  2.0000000000000002e-82  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0313  hydroxymethylglutaryl-CoA lyase  51.84 
 
 
310 aa  305  5.0000000000000004e-82  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_3007  hydroxymethylglutaryl-CoA lyase  51.66 
 
 
310 aa  305  5.0000000000000004e-82  Burkholderia ambifaria AMMD  Bacteria  normal  0.868623  n/a   
 
 
-
 
NC_010551  BamMC406_2870  hydroxymethylglutaryl-CoA lyase  51.32 
 
 
310 aa  305  6e-82  Burkholderia ambifaria MC40-6  Bacteria  normal  0.534298  normal  0.868536 
 
 
-
 
NC_008825  Mpe_A3354  hydroxymethylglutaryl-CoA lyase  51.9 
 
 
307 aa  303  3.0000000000000004e-81  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0477  pyruvate carboxyltransferase  48.38 
 
 
308 aa  303  3.0000000000000004e-81  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3038  pyruvate carboxyltransferase  49.49 
 
 
304 aa  303  4.0000000000000003e-81  Acidovorax ebreus TPSY  Bacteria  normal  0.928882  n/a   
 
 
-
 
NC_008752  Aave_4349  hydroxymethylglutaryl-CoA lyase  49.5 
 
 
303 aa  302  4.0000000000000003e-81  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2345  hydroxymethylglutaryl-CoA lyase  51.35 
 
 
310 aa  301  7.000000000000001e-81  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.511724  n/a   
 
 
-
 
NC_008542  Bcen2424_2959  hydroxymethylglutaryl-CoA lyase  51.35 
 
 
310 aa  301  7.000000000000001e-81  Burkholderia cenocepacia HI2424  Bacteria  normal  0.504237  n/a   
 
 
-
 
NC_012791  Vapar_4710  pyruvate carboxyltransferase  48.99 
 
 
306 aa  301  1e-80  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011680  PHATRDRAFT_13643  hydroxymethylglutaryl-coenzyme A lyase  51.16 
 
 
321 aa  301  1e-80  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.404031  n/a   
 
 
-
 
NC_009952  Dshi_1303  hydroxymethylglutaryl-CoA lyase  54.17 
 
 
287 aa  300  2e-80  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.15453  normal  0.0935443 
 
 
-
 
NC_007510  Bcep18194_A6309  hydroxymethylglutaryl-CoA lyase  51.35 
 
 
310 aa  300  2e-80  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2980  hydroxymethylglutaryl-CoA lyase  51.35 
 
 
310 aa  300  2e-80  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3824  pyruvate carboxyltransferase  50 
 
 
302 aa  299  5e-80  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1940  hydroxymethylglutaryl-CoA lyase  56.64 
 
 
304 aa  298  8e-80  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.307176  n/a   
 
 
-
 
NC_007517  Gmet_3293  hydroxymethylglutaryl-CoA lyase  55.52 
 
 
309 aa  297  1e-79  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1888  pyruvate carboxyltransferase  51.19 
 
 
306 aa  297  2e-79  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5964  pyruvate carboxyltransferase  47.71 
 
 
313 aa  296  3e-79  Delftia acidovorans SPH-1  Bacteria  normal  0.0367175  normal 
 
 
-
 
NC_007948  Bpro_4155  hydroxymethylglutaryl-CoA lyase  46.73 
 
 
306 aa  294  1e-78  Polaromonas sp. JS666  Bacteria  normal  normal  0.951896 
 
 
-
 
NC_008687  Pden_3641  hydroxymethylglutaryl-CoA lyase  52.06 
 
 
289 aa  294  2e-78  Paracoccus denitrificans PD1222  Bacteria  normal  0.520749  normal  0.388068 
 
 
-
 
NC_007347  Reut_A1462  hydroxymethylglutaryl-CoA lyase  51.51 
 
 
317 aa  291  6e-78  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4536  hydroxymethylglutaryl-CoA lyase  50.9 
 
 
289 aa  291  9e-78  Sinorhizobium medicae WSM419  Bacteria  normal  0.696155  normal 
 
 
-
 
NC_009524  PsycPRwf_2063  pyruvate carboxyltransferase  48.01 
 
 
304 aa  290  2e-77  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0040  hydroxymethylglutaryl-CoA lyase  49.63 
 
 
287 aa  287  2e-76  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.723185  n/a   
 
 
-
 
NC_012793  GWCH70_1838  hydroxymethylglutaryl-CoA lyase  47.1 
 
 
299 aa  286  2.9999999999999996e-76  Geobacillus sp. WCH70  Bacteria  normal  0.611608  n/a   
 
 
-
 
NC_009505  BOV_0014  hydroxymethylglutaryl-CoA lyase  49.1 
 
 
287 aa  284  1.0000000000000001e-75  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0514  pyruvate carboxyltransferase  48.76 
 
 
303 aa  281  7.000000000000001e-75  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.00792422  normal 
 
 
-
 
NC_007969  Pcryo_0343  pyruvate carboxyltransferase  45.87 
 
 
306 aa  280  3e-74  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0312  hydroxymethylglutaryl-CoA lyase  45.21 
 
 
306 aa  278  6e-74  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
BN001301  ANIA_10797  hydroxymethylglutaryl-CoA lyase (AFU_orthologue; AFUA_2G12450)  45.6 
 
 
353 aa  276  3e-73  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.94715  normal  0.278378 
 
 
-
 
NC_013159  Svir_05920  hydroxymethylglutaryl-CoA lyase  49.32 
 
 
314 aa  274  1.0000000000000001e-72  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.935262 
 
 
-
 
NC_014165  Tbis_2152  pyruvate carboxyltransferase  46.92 
 
 
298 aa  274  1.0000000000000001e-72  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2443  hydroxymethylglutaryl-CoA lyase  46.42 
 
 
297 aa  273  2.0000000000000002e-72  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
BN001305  ANIA_05273  3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase (EC 4.1.3.4)(EC 4.2.1.18) [Source:UniProtKB/TrEMBL;Acc:Q6S014]  47.67 
 
 
599 aa  271  7e-72  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.347874  normal 
 
 
-
 
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