| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0086 |
|---|
| Symbol | |
|---|
| ID | 3569725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 102677 |
|---|
| End bp | 103582 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637678521 |
|---|
| Product | hydroxymethylglutaryl-CoA lyase |
|---|
| Protein accession | YP_283315 |
|---|
| Protein GI | 71905728 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTCC CCGCCAAAGT CAAAATCGTC GAAGTCGGCC CGCGTGACGG ACTGCAGAAC
GAAAAGCTGG TCGTCCCGAC CGACATCAAG ATCGAACTGA TCAACCGACT GGCCGATGTC
GGCCTGAGCG TCATCGAGGC CACCTCCTTC GTATCGCCGA AGTGGGTGCC GCAGATGGGC
GACAACGCTG CCGTGATGCA GGGCATCAAG CGGAACCCGT CGACCATTTA CACAGCCTTG
ACGCCAAATC TGCAGGGATT TGATGGTGCC GTACAGGCCG GCGCCAACGA AGTCGCCATT
TTTGGTGCGG CATCGGAGAG TTTTTCCCGA AAAAACATCA ATTGCTCGAT CGCCGAGAGC
CTGAAACGCT TCGAACCCGT CGTTTCAGCC GCTTCGGCAC TGGAAATCCC GGTCCGCGGC
TATGTATCCT GCGTTGTCGG CTGCCCCTAC GAGGGTGCGA TCGATCCGCA CAAAGCCGCC
GATGTGGCGA AAATCCTGTT CGACATGGGC TGCTACGAAG TCTCGCTCGG CGACACCATC
GGTGTTGGCA ATCCGGCCAC CATCCAGCGC ATGATCGAGG CCTGTGCAAA ACATATCCCG
ATCAGCAAGC TGGCCGGGCA CTATCACGAT ACCTACGGCA TGGCCATCGC CAACATCTAC
GCTTCGCTGG AGATGGGCAT GGCAGTTTTC GACAGTTCCA TCGCCGGCCT CGGCGGCTGC
CCCTACGCTA AAGGGGCCTC CGGCAATGTG GCGACCGAAG ACGTCGTTTA TTTATTACAC
GGCCTGGGCA TTGAAACCGG CATCGATCTG GCTAAACTGG CAGGTATCGG CGACTGGATT
TCCAGCGCCA TCAATCGCCC GAATGGAGCC AAGGCCGGCC GGGCCCTTTG TACCGGGAAC
GAGTGA
|
|---|
| Protein sequence | MSLPAKVKIV EVGPRDGLQN EKLVVPTDIK IELINRLADV GLSVIEATSF VSPKWVPQMG
DNAAVMQGIK RNPSTIYTAL TPNLQGFDGA VQAGANEVAI FGAASESFSR KNINCSIAES
LKRFEPVVSA ASALEIPVRG YVSCVVGCPY EGAIDPHKAA DVAKILFDMG CYEVSLGDTI
GVGNPATIQR MIEACAKHIP ISKLAGHYHD TYGMAIANIY ASLEMGMAVF DSSIAGLGGC
PYAKGASGNV ATEDVVYLLH GLGIETGIDL AKLAGIGDWI SSAINRPNGA KAGRALCTGN
E
|
|---|
| |