Gene Ssed_1454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1454 
Symbol 
ID5610894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1724127 
End bp1725017 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content52% 
IMG OID640932320 
Productpyruvate carboxyltransferase 
Protein accessionYP_001473193 
Protein GI157374593 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.119329 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCCAA ATCAGGTCAG TATTTTCGAA GTTGGCGCCC GTGACGGCTT ACAAAATGAA 
AAGAGTGTCA GCACGCAAGA CAAGATAGCC TTAATAGAAG GTTTAGCCAA TGCTGGCATC
AAGCGTATCG AGGCTGCGAG CTTTGTCTCT CCCAAGTGGG TACCACAGAT GGCCGACTCG
GGAGAGGTGC TTAAAAACAT CAACCGAAAC AGCGCCGTGA CCTACAGCGC CTTGACCCCC
AACTTAAAGG GACTGGAACT TGCCCTTGAC GCGGGAGCCG ACGAAGTCGC CATATTCGGT
GCCGCTTCTC AAAGCTTCAG TCAACGCAAC ATCAACTGCT CCATCGAGGA GTCGATAGAG
CGCTTTATTC CTGTAATAGA GCGGGCTCAG GCTGCTAATG TTCCGGTCAG AGGCTATGTG
TCCTGTGTGC TGGGCTGCCC CTATGAAGGA GATATCCCCT CGAGTGAAGT CGCTCGGGTG
TCTGAAATCC TTTACAAGAT GGGCTGTTAT GAAATTTCAC TGGGTGACAC CATAGGCGTT
GGCACACCGC ACAATGCCCG TAAAATGGTT GAAGAGGTGA GCCGCAAGGT TCCTGTCGAC
AAACTCGCAC TACACTTTCA TGATACCTAC GGCCAGGCAC TGGCCAACAT TCTGGCCTGT
TTAGAAACCG GAGTGAGCGT TATCGACTCT TCGGTTGCGG GCCTCGGTGG CTGCCCCTAT
GCCAAAGGTG CATCGGGTAA CTTAGCCACC GAAGATTTAG TCTATATGTT GCATGGATTA
GGGATAGATA CCGGCATCGA TCTGCGCTTG TTAGCGAGTG CAGGAGATGC AATAAGTCAG
ACACTGGGCA AAACAACCGG CTCAAAGGTC GCTCAAGCGA TGGGCAAATA A
 
Protein sequence
MLPNQVSIFE VGARDGLQNE KSVSTQDKIA LIEGLANAGI KRIEAASFVS PKWVPQMADS 
GEVLKNINRN SAVTYSALTP NLKGLELALD AGADEVAIFG AASQSFSQRN INCSIEESIE
RFIPVIERAQ AANVPVRGYV SCVLGCPYEG DIPSSEVARV SEILYKMGCY EISLGDTIGV
GTPHNARKMV EEVSRKVPVD KLALHFHDTY GQALANILAC LETGVSVIDS SVAGLGGCPY
AKGASGNLAT EDLVYMLHGL GIDTGIDLRL LASAGDAISQ TLGKTTGSKV AQAMGK