| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3540 |
|---|
| Symbol | mvaB |
|---|
| ID | 1045560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4012162 |
|---|
| End bp | 4013061 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637146955 |
|---|
| Product | hydroxymethylglutaryl-CoA lyase |
|---|
| Protein accession | NP_745677 |
|---|
| Protein GI | 26990252 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGC CCAAACACGT CCGCCTGGTC GAAGTCGGCC CCCGCGACGG CCTGCAGAAC
GAAGCCCAGC CCATCAGCGT TGCCGACAAG GTACGCCTGG TCAACGACCT TACCGAAGCG
GGCCTGGCCT ATATAGAAGT GGGCAGTTTC GTGTCCCCCA AGTGGGTGCC ACAGATGGCC
GGCTCTGCCG AGGTATTCGC CGGCATCCAA CAGCGCCCCG GTGTGACGTA TGCCGCACTG
GCGCCAAACC TGCGCGGTTT CGAGGACGCC CTGGCTGCCG GGGTCAAGGA AGTAGCGGTG
TTCGCTGCCG CCTCCGAAGC GTTCTCGCAA CGCAACATCA ATTGCTCGAT CAGCGAAAGC
CTCAAGCGCT TCGAACCCAT CATGGACGCT GCGCGCAGCC ACGGCATGCG CGTGCGCGGG
TATGTGTCGT GTGTGCTTGG CTGCCCTTAC GAGGGCAAGG TCAGCGCCGA GCAGGTGGCC
CCGGTGGCCC GCGCCCTGCA CGACATGGGC TGCTACGAGG TCTCGCTGGG TGACACCATC
GGCACCGGTA CCGCAGGCGA CACCCGACGC CTGTTCGAGG TGGTGTCGGC CCAGGTACCG
CGCGAGCAGT TGGCCGGACA CTTCCATGAC ACTTACGGCC AGGCCTTGGC TAACGTCTAT
GCCAGCCTGC TCGAGGGCAT CAGCGTATTC GACAGCTCGG TAGCCGGGCT GGGCGGCTGC
CCTTACGCCA AGGGTGCTAC CGGCAATATC GCCAGTGAAG ACGTTGTGTA CCTGCTGCAG
GGGCTTGGCA TTGAAACCGG CATCGACCTG GGCCTGCTGA TAGCCGCCGG CCAGCGCATC
AGCGGCGTGC TGGGCCGCGA CAACGGGTCG CGGGTAGCAC GGGCGTGCAG CGCACAATAG
|
|---|
| Protein sequence | MSLPKHVRLV EVGPRDGLQN EAQPISVADK VRLVNDLTEA GLAYIEVGSF VSPKWVPQMA
GSAEVFAGIQ QRPGVTYAAL APNLRGFEDA LAAGVKEVAV FAAASEAFSQ RNINCSISES
LKRFEPIMDA ARSHGMRVRG YVSCVLGCPY EGKVSAEQVA PVARALHDMG CYEVSLGDTI
GTGTAGDTRR LFEVVSAQVP REQLAGHFHD TYGQALANVY ASLLEGISVF DSSVAGLGGC
PYAKGATGNI ASEDVVYLLQ GLGIETGIDL GLLIAAGQRI SGVLGRDNGS RVARACSAQ
|
|---|
| |