Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1943 |
Symbol | |
ID | 6110894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 2174069 |
End bp | 2174968 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641621738 |
Product | hydroxymethylglutaryl-CoA lyase |
Protein accession | YP_001748815 |
Protein GI | 170721127 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.483934 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000417953 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTTTGC CCGAAAAAGT CCGCCTGGTC GAAGTCGGCC CCCGCGACGG CCTGCAGAAC GAAGCCCAGC CCATCAGCGT CGCCGACAAG GTGCGGCTGG TCGACGACCT TACCGACGCC GGGTTGGCCT ACATTGAAGT CGGCAGTTTC GTTTCGCCCA AATGGGTGCC GCAGATGGCC GGCTCTGCCG ACGTGTTCGC GGCTATCGAG CAACGCGCGG GTGTTACCTA TGCCGCCCTG GCGCCCAACC TGCGCGGCTT CGAAGACGCC CTGGCAGCCG GGGTGAAGGA AGTGGCGGTG TTCGCTGCCG CGTCCGAGGC GTTTTCCCAG CGCAACATCA ATTGCTCGAT CAGTGAAAGC CTCAACCGTT TCGAGCCGAT CATGCAGGCG GCGCGCAGCC ACGGTGTGCG GGTACGCGGT TACGTTTCCT GCGTGCTCGG CTGCCCATAT GAGGGCAGGG TCAGTGCCGA ACAGGTCGCC CCGGTGGCCA AGGCGCTGCA CGAGATGGGC TGCTACGAAG TCTCCCTGGG TGACACCATC GGTACTGGCA CCGCAGGCGA TACCCGCAGG CTGTTCGAGG TAGTCTCGGC GCACGTGCCG CGTGAGCAAC TGGCCGGGCA CTTCCACGAT ACCTACGGCC AGGCGCTGGC CAACGTGTAT GCCAGCCTGC TCGAAGGCAT CAGTGTGTTC GACAGCTCGG TGGCCGGCCT TGGGGGGTGC CCCTATGCCA AGGGCGCCAC GGGCAATATC GCCACCGAGG ATGTGGTGTA CCTGCTGCAG GGGCTAGGGA TTGAAACCGG CATTGACCTG GACCGCTTGA TCGCTGCCGG GCAGCGGATC AGCAAGGTGC TGGGCCGGGC CAACGGCTCG CGTGTGGCGC GGGCACGCAG CGCACAGTGA
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Protein sequence | MPLPEKVRLV EVGPRDGLQN EAQPISVADK VRLVDDLTDA GLAYIEVGSF VSPKWVPQMA GSADVFAAIE QRAGVTYAAL APNLRGFEDA LAAGVKEVAV FAAASEAFSQ RNINCSISES LNRFEPIMQA ARSHGVRVRG YVSCVLGCPY EGRVSAEQVA PVAKALHEMG CYEVSLGDTI GTGTAGDTRR LFEVVSAHVP REQLAGHFHD TYGQALANVY ASLLEGISVF DSSVAGLGGC PYAKGATGNI ATEDVVYLLQ GLGIETGIDL DRLIAAGQRI SKVLGRANGS RVARARSAQ
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