Gene PputW619_1943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_1943 
Symbol 
ID6110894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp2174069 
End bp2174968 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content66% 
IMG OID641621738 
Producthydroxymethylglutaryl-CoA lyase 
Protein accessionYP_001748815 
Protein GI170721127 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.483934 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000417953 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTTTGC CCGAAAAAGT CCGCCTGGTC GAAGTCGGCC CCCGCGACGG CCTGCAGAAC 
GAAGCCCAGC CCATCAGCGT CGCCGACAAG GTGCGGCTGG TCGACGACCT TACCGACGCC
GGGTTGGCCT ACATTGAAGT CGGCAGTTTC GTTTCGCCCA AATGGGTGCC GCAGATGGCC
GGCTCTGCCG ACGTGTTCGC GGCTATCGAG CAACGCGCGG GTGTTACCTA TGCCGCCCTG
GCGCCCAACC TGCGCGGCTT CGAAGACGCC CTGGCAGCCG GGGTGAAGGA AGTGGCGGTG
TTCGCTGCCG CGTCCGAGGC GTTTTCCCAG CGCAACATCA ATTGCTCGAT CAGTGAAAGC
CTCAACCGTT TCGAGCCGAT CATGCAGGCG GCGCGCAGCC ACGGTGTGCG GGTACGCGGT
TACGTTTCCT GCGTGCTCGG CTGCCCATAT GAGGGCAGGG TCAGTGCCGA ACAGGTCGCC
CCGGTGGCCA AGGCGCTGCA CGAGATGGGC TGCTACGAAG TCTCCCTGGG TGACACCATC
GGTACTGGCA CCGCAGGCGA TACCCGCAGG CTGTTCGAGG TAGTCTCGGC GCACGTGCCG
CGTGAGCAAC TGGCCGGGCA CTTCCACGAT ACCTACGGCC AGGCGCTGGC CAACGTGTAT
GCCAGCCTGC TCGAAGGCAT CAGTGTGTTC GACAGCTCGG TGGCCGGCCT TGGGGGGTGC
CCCTATGCCA AGGGCGCCAC GGGCAATATC GCCACCGAGG ATGTGGTGTA CCTGCTGCAG
GGGCTAGGGA TTGAAACCGG CATTGACCTG GACCGCTTGA TCGCTGCCGG GCAGCGGATC
AGCAAGGTGC TGGGCCGGGC CAACGGCTCG CGTGTGGCGC GGGCACGCAG CGCACAGTGA
 
Protein sequence
MPLPEKVRLV EVGPRDGLQN EAQPISVADK VRLVDDLTDA GLAYIEVGSF VSPKWVPQMA 
GSADVFAAIE QRAGVTYAAL APNLRGFEDA LAAGVKEVAV FAAASEAFSQ RNINCSISES
LNRFEPIMQA ARSHGVRVRG YVSCVLGCPY EGRVSAEQVA PVAKALHEMG CYEVSLGDTI
GTGTAGDTRR LFEVVSAHVP REQLAGHFHD TYGQALANVY ASLLEGISVF DSSVAGLGGC
PYAKGATGNI ATEDVVYLLQ GLGIETGIDL DRLIAAGQRI SKVLGRANGS RVARARSAQ