Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2398 |
Symbol | |
ID | 4256023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2840815 |
End bp | 2841762 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638123067 |
Product | hydroxymethylglutaryl-CoA lyase |
Protein accession | YP_738441 |
Protein GI | 114047891 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.515821 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGCGC TGGATCTTTC GAACTTAAGC ACGACCTCGG TAAGCGCCAG CTCGGATAGG GTTAGCCTGT TCGAGATGGG GCCACGTGAT GGCTTGCAGA ATGAAGCCGC CGTCCCAACA CAGGCCAAAG TCGCCTTGAT TGAATCCCTC GCCGATGCGG GCGTGAAGCG AATTGAAGCT GGCAGCTTTG TGTCACCCAA ATGGGTGCCA CAAATGGCCG ATAGTGGCGA AGTATTGCGC CAAATTCGCC GTCAAGCGGG CGTGGTTTAC AGCGCCCTCA CCCCCAATGT CAAAGGCTTA GAGCTGGCGC TGGATGCAAA AGCTTCCGAA GTCGCTATCT TTGGTGCGGC GTCACAAAGC TTTAGCCAAC GCAATATCAA CTGTTCGATT GAAGAGTCGA TTGAACGCTT TATCCCGTTG ATGGACATGG CAAAAGCCGC CAACATCCCA GTGCGTGGCT ATGTGTCCTG CGTTTTAGGT TGCCCATATG AAGGGGAAAT CGCGGCGAGC GAAGTGGCAA GAGTGTCTGA AATCCTTTAC AAAATGGGCT GTTACGAAAT TTCGCTCGGC GACACTATCG GTGTAGGCAC GCCGTTAAAA GCCCGTAAAA TGCTGCAAGC CGTGATGGAG CGAGTCCCAG TTGAAAAGCT CGCCCTGCAC TTCCACGACA CCTATGGCCA AGCATTAGCC AATATTACCG CCTGCCTCGA CTTAGGCGTG CGCAGCTTTG ACGCCTCAGT AGCAGGCCTA GGTGGTTGCC CGTATGCGAA AGGCGCGTCG GGCAATCTAG CGAGTGAAGA CTTGGTCTAT ATGCTCCACG GGCTCGGTTT GAAGACGGGT ATCGATTTAG AAAAACTGGC ATTAGCGGGT TTTGGGATCA GCAAACAATT AAATCGTCTT AATGGCTCTA AAGTCGCCAA TGCAATCTTG CAGGGCGCTA AAGCCTAG
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Protein sequence | MSALDLSNLS TTSVSASSDR VSLFEMGPRD GLQNEAAVPT QAKVALIESL ADAGVKRIEA GSFVSPKWVP QMADSGEVLR QIRRQAGVVY SALTPNVKGL ELALDAKASE VAIFGAASQS FSQRNINCSI EESIERFIPL MDMAKAANIP VRGYVSCVLG CPYEGEIAAS EVARVSEILY KMGCYEISLG DTIGVGTPLK ARKMLQAVME RVPVEKLALH FHDTYGQALA NITACLDLGV RSFDASVAGL GGCPYAKGAS GNLASEDLVY MLHGLGLKTG IDLEKLALAG FGISKQLNRL NGSKVANAIL QGAKA
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