Gene Shewmr7_2398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2398 
Symbol 
ID4256023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2840815 
End bp2841762 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content53% 
IMG OID638123067 
Producthydroxymethylglutaryl-CoA lyase 
Protein accessionYP_738441 
Protein GI114047891 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.515821 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCGC TGGATCTTTC GAACTTAAGC ACGACCTCGG TAAGCGCCAG CTCGGATAGG 
GTTAGCCTGT TCGAGATGGG GCCACGTGAT GGCTTGCAGA ATGAAGCCGC CGTCCCAACA
CAGGCCAAAG TCGCCTTGAT TGAATCCCTC GCCGATGCGG GCGTGAAGCG AATTGAAGCT
GGCAGCTTTG TGTCACCCAA ATGGGTGCCA CAAATGGCCG ATAGTGGCGA AGTATTGCGC
CAAATTCGCC GTCAAGCGGG CGTGGTTTAC AGCGCCCTCA CCCCCAATGT CAAAGGCTTA
GAGCTGGCGC TGGATGCAAA AGCTTCCGAA GTCGCTATCT TTGGTGCGGC GTCACAAAGC
TTTAGCCAAC GCAATATCAA CTGTTCGATT GAAGAGTCGA TTGAACGCTT TATCCCGTTG
ATGGACATGG CAAAAGCCGC CAACATCCCA GTGCGTGGCT ATGTGTCCTG CGTTTTAGGT
TGCCCATATG AAGGGGAAAT CGCGGCGAGC GAAGTGGCAA GAGTGTCTGA AATCCTTTAC
AAAATGGGCT GTTACGAAAT TTCGCTCGGC GACACTATCG GTGTAGGCAC GCCGTTAAAA
GCCCGTAAAA TGCTGCAAGC CGTGATGGAG CGAGTCCCAG TTGAAAAGCT CGCCCTGCAC
TTCCACGACA CCTATGGCCA AGCATTAGCC AATATTACCG CCTGCCTCGA CTTAGGCGTG
CGCAGCTTTG ACGCCTCAGT AGCAGGCCTA GGTGGTTGCC CGTATGCGAA AGGCGCGTCG
GGCAATCTAG CGAGTGAAGA CTTGGTCTAT ATGCTCCACG GGCTCGGTTT GAAGACGGGT
ATCGATTTAG AAAAACTGGC ATTAGCGGGT TTTGGGATCA GCAAACAATT AAATCGTCTT
AATGGCTCTA AAGTCGCCAA TGCAATCTTG CAGGGCGCTA AAGCCTAG
 
Protein sequence
MSALDLSNLS TTSVSASSDR VSLFEMGPRD GLQNEAAVPT QAKVALIESL ADAGVKRIEA 
GSFVSPKWVP QMADSGEVLR QIRRQAGVVY SALTPNVKGL ELALDAKASE VAIFGAASQS
FSQRNINCSI EESIERFIPL MDMAKAANIP VRGYVSCVLG CPYEGEIAAS EVARVSEILY
KMGCYEISLG DTIGVGTPLK ARKMLQAVME RVPVEKLALH FHDTYGQALA NITACLDLGV
RSFDASVAGL GGCPYAKGAS GNLASEDLVY MLHGLGLKTG IDLEKLALAG FGISKQLNRL
NGSKVANAIL QGAKA