64 homologs were found in PanDaTox collection
for query gene HS_1608 on replicon NC_008309
Organism: Haemophilus somnus 129PT



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008309  HS_1608  positive sigma-E factor regulatory protein  100 
 
 		 167 aa  335  1.9999999999999998e-91  Haemophilus somnus 129PT  Bacteria  normal  0.0389331  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  33.8 
 
 		 150 aa  98.6  3e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  34.51 
 
 		 150 aa  95.9  3e-19  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  34.51 
 
 		 159 aa  94.7  6e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  0.156123 
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  33.8 
 
 		 159 aa  94  8e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.74612 
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  33.8 
 
 		 159 aa  94  8e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  33.8 
 
 		 159 aa  94  8e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal  1 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  33.8 
 
 		 159 aa  94  8e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_012880  Dd703_2788  SoxR reducing system protein RseC  34.51 
 
 		 155 aa  91.7  5e-18  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00872544  n/a   
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  32.62 
 
 		 157 aa  89.7  1e-17  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  36.73 
 
 		 159 aa  87.8  6e-17  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  36.73 
 
 		 159 aa  87.8  6e-17  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  36.73 
 
 		 159 aa  87.8  6e-17  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  36.73 
 
 		 159 aa  87.8  6e-17  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  36.73 
 
 		 159 aa  87.8  6e-17  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
-
 
NC_012892  B21_02428  hypothetical protein  36.73 
 
 		 159 aa  87.8  6e-17  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  36.73 
 
 		 159 aa  87.8  6e-17  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  36.73 
 
 		 159 aa  87.8  6e-17  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_009436  Ent638_3057  SoxR reducing system protein RseC  33.1 
 
 		 158 aa  86.3  2e-16  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  30.99 
 
 		 151 aa  86.3  2e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  30.99 
 
 		 151 aa  86.3  2e-16  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  30.99 
 
 		 151 aa  86.3  2e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  32.39 
 
 		 159 aa  84.7  5e-16  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
-
 
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  27.27 
 
 		 157 aa  77.4  0.00000000000008  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  29.66 
 
 		 149 aa  70.9  0.000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  28.97 
 
 		 148 aa  70.5  0.00000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_012912  Dd1591_1065  SoxR reducing system protein RseC  30.99 
 
 		 156 aa  68.2  0.00000000005  Dickeya zeae Ech1591  Bacteria  normal  0.148903  n/a   
 
 
-
 
NC_011312  VSAL_I2528  sigma-E factor regulatory protein RseC  30.2 
 
 		 161 aa  66.2  0.0000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  36.49 
 
 		 151 aa  65.1  0.0000000004  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal  1 
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  27.34 
 
 		 151 aa  63.9  0.000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal  1 
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  25 
 
 		 155 aa  61.6  0.000000004  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  33 
 
 		 168 aa  61.2  0.000000007  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_012560  Avin_13720  Positive regulator for alginate biosynthesis MucC  25.87 
 
 		 156 aa  60.5  0.00000001  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  30.41 
 
 		 149 aa  59.3  0.00000002  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00000126596  normal  0.71927 
 
 
-
 
NC_009901  Spea_1034  positive regulator of sigma E, RseC/MucC  37.5 
 
 		 154 aa  58.9  0.00000003  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00221159  n/a   
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  28.24 
 
 		 156 aa  57.4  0.00000009  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_009092  Shew_1051  positive regulator of sigma E, RseC/MucC  38.78 
 
 		 158 aa  57  0.0000001  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000179706  normal  1 
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  27.48 
 
 		 167 aa  57  0.0000001  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000000405546  n/a   
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  33.98 
 
 		 157 aa  56.6  0.0000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  30 
 
 		 177 aa  56.2  0.0000002  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_003910  CPS_4126  sigma-E factor regulatory protein RseC  31.53 
 
 		 159 aa  55.8  0.0000002  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  25 
 
 		 151 aa  56.2  0.0000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal  1 
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  25.69 
 
 		 151 aa  56.6  0.0000002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  35.16 
 
 		 157 aa  53.1  0.000002  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  35.16 
 
 		 157 aa  53.1  0.000002  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal  1 
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  35.16 
 
 		 157 aa  53.1  0.000002  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000634638  n/a   
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  35.16 
 
 		 157 aa  53.1  0.000002  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  35.16 
 
 		 157 aa  52.4  0.000003  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  26.17 
 
 		 143 aa  52.4  0.000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  21.19 
 
 		 152 aa  51.6  0.000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  24.16 
 
 		 147 aa  51.2  0.000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  38.75 
 
 		 167 aa  49.7  0.00002  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_010320  Teth514_2252  positive regulator of sigma E, RseC/MucC  26.17 
 
 		 146 aa  48.9  0.00003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0077769  n/a   
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  30 
 
 		 159 aa  47.8  0.00008  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_011059  Paes_1308  positive regulator of sigma E, RseC/MucC  31.71 
 
 		 131 aa  47.4  0.0001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.417776  normal  1 
 
 
-
 
NC_010506  Swoo_1240  positive regulator of sigma E, RseC/MucC  38.27 
 
 		 151 aa  47  0.0001  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0000139307  hitchhiker  0.0000157643 
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  27.62 
 
 		 146 aa  45.4  0.0004  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_03539  positive regulator of sigma E activity  30.56 
 
 		 156 aa  45.4  0.0004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_0877  sigma-E factor regulatory protein RseC  35.8 
 
 		 159 aa  45.1  0.0004  Shewanella amazonensis SB2B  Bacteria  normal  0.475594  normal  0.0507678 
 
 
-
 
NC_009439  Pmen_1470  positive regulator of sigma E, RseC/MucC  28.38 
 
 		 151 aa  43.9  0.001  Pseudomonas mendocina ymp  Bacteria  normal  0.51254  normal  1 
 
 
-
 
NC_010803  Clim_0990  Positive regulator of sigma(E) RseC/MucC  28.97 
 
 		 130 aa  42.4  0.003  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_002494  sigma factor RpoE regulatory protein RseC  29.11 
 
 		 156 aa  42  0.003  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000000204046  n/a   
 
 
-
 
NC_009457  VC0395_A2042  sigma-E factor regulatory protein RseC  27.86 
 
 		 156 aa  42.4  0.003  Vibrio cholerae O395  Bacteria  normal  0.436748  n/a   
 
 
-
 
NC_013223  Dret_1803  positive regulator of sigma E, RseC/MucC  20.9 
 
 		 151 aa  41.2  0.007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  1 
 
 
-
 
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