62 homologs were found in PanDaTox collection
for query gene Pmen_1470 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_1470  positive regulator of sigma E, RseC/MucC  100 
 
 		 151 aa  288  1e-77  Pseudomonas mendocina ymp  Bacteria  normal  0.51254  normal  1 
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  68.06 
 
 		 151 aa  173  6e-43  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal  1 
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  67.36 
 
 		 151 aa  170  6.999999999999999e-42  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_13720  Positive regulator for alginate biosynthesis MucC  51.75 
 
 		 156 aa  131  3.9999999999999996e-30  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  46.71 
 
 		 157 aa  121  3e-27  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  34.75 
 
 		 155 aa  88.2  4e-17  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  37.59 
 
 		 156 aa  85.9  2e-16  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  38.06 
 
 		 149 aa  82  0.000000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  33.56 
 
 		 168 aa  72.4  0.000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  32.62 
 
 		 151 aa  71.6  0.000000000003  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  32.62 
 
 		 151 aa  71.6  0.000000000003  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  32.62 
 
 		 151 aa  71.6  0.000000000003  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  31.25 
 
 		 150 aa  71.6  0.000000000003  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  33.1 
 
 		 150 aa  72  0.000000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_008309  HS_1608  positive sigma-E factor regulatory protein  28.38 
 
 		 167 aa  71.6  0.000000000004  Haemophilus somnus 129PT  Bacteria  normal  0.0389331  n/a   
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  38.51 
 
 		 147 aa  70.5  0.000000000008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  34.72 
 
 		 159 aa  69.3  0.00000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  34.72 
 
 		 159 aa  69.3  0.00000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  34.72 
 
 		 159 aa  69.3  0.00000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.74612 
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  34.72 
 
 		 159 aa  69.3  0.00000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal  1 
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  34.03 
 
 		 159 aa  69.3  0.00000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  0.156123 
 
 
-
 
NC_009901  Spea_1034  positive regulator of sigma E, RseC/MucC  32.67 
 
 		 154 aa  68.6  0.00000000003  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00221159  n/a   
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  32.64 
 
 		 159 aa  67.8  0.00000000005  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  32.64 
 
 		 159 aa  67.8  0.00000000005  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  33.33 
 
 		 159 aa  67.8  0.00000000005  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  32.64 
 
 		 159 aa  67.8  0.00000000005  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  32.64 
 
 		 159 aa  67.4  0.00000000007  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  32.64 
 
 		 159 aa  67.4  0.00000000007  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  32.64 
 
 		 159 aa  67.4  0.00000000007  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  32.64 
 
 		 159 aa  67.4  0.00000000007  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_02428  hypothetical protein  32.64 
 
 		 159 aa  67.4  0.00000000007  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  40 
 
 		 146 aa  67  0.00000000009  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  33.33 
 
 		 157 aa  65.5  0.0000000002  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_009436  Ent638_3057  SoxR reducing system protein RseC  33.57 
 
 		 158 aa  65.5  0.0000000003  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  30.41 
 
 		 148 aa  65.1  0.0000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  27.43 
 
 		 149 aa  65.1  0.0000000003  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00000126596  normal  0.71927 
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  33.77 
 
 		 177 aa  65.1  0.0000000003  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  41.86 
 
 		 151 aa  63.9  0.0000000007  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal  1 
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  28.03 
 
 		 167 aa  63.5  0.0000000009  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  33.94 
 
 		 159 aa  63.5  0.0000000009  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  31.54 
 
 		 157 aa  62.4  0.000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  28.67 
 
 		 151 aa  61.6  0.000000003  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal  1 
 
 
-
 
NC_012880  Dd703_2788  SoxR reducing system protein RseC  32.64 
 
 		 155 aa  61.6  0.000000003  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00872544  n/a   
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  35.86 
 
 		 183 aa  61.6  0.000000004  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  35.64 
 
 		 167 aa  60.1  0.00000001  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000000405546  n/a   
 
 
-
 
NC_011312  VSAL_I2528  sigma-E factor regulatory protein RseC  26.54 
 
 		 161 aa  59.3  0.00000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  30.07 
 
 		 157 aa  58.2  0.00000004  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000634638  n/a   
 
 
-
 
NC_003910  CPS_4126  sigma-E factor regulatory protein RseC  38.54 
 
 		 159 aa  57.8  0.00000005  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  26.32 
 
 		 152 aa  57.8  0.00000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  29.41 
 
 		 157 aa  55.8  0.0000002  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  29.41 
 
 		 157 aa  55.8  0.0000002  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_012912  Dd1591_1065  SoxR reducing system protein RseC  33.11 
 
 		 156 aa  55.5  0.0000002  Dickeya zeae Ech1591  Bacteria  normal  0.148903  n/a   
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  29.41 
 
 		 157 aa  55.8  0.0000002  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal  1 
 
 
-
 
NC_009092  Shew_1051  positive regulator of sigma E, RseC/MucC  31.13 
 
 		 158 aa  52  0.000002  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000179706  normal  1 
 
 
-
 
NC_010718  Nther_1269  positive regulator of sigma E, RseC/MucC  27.03 
 
 		 151 aa  51.6  0.000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  32.35 
 
 		 157 aa  51.2  0.000005  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_007484  Noc_2463  positive regulator of sigma(E), RseC/MucC  26.74 
 
 		 146 aa  46.2  0.0002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.939617  n/a   
 
 
-
 
NC_010003  Pmob_1580  positive regulator of sigma E, RseC/MucC  27.74 
 
 		 151 aa  44.7  0.0004  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_1491  positive regulator of sigma(E), RseC/MucC  31.54 
 
 		 180 aa  44.3  0.0007  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.392689 
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  25 
 
 		 143 aa  43.5  0.001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
NC_007498  Pcar_1825  positive regulator of sigma E activity  29.14 
 
 		 156 aa  43.1  0.001  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  0.00000000801133  n/a   
 
 
-
 
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  23.57 
 
 		 147 aa  41.6  0.004  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal  1 
 
 
-
 
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